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Report for CCDS29713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29713.1 Public Mus musculus 19 Tmem252 23 108 98 CCDS HistoryNCBI Gene:226040Re-query CCDS DB by CCDS ID:29713.1Re-query CCDS DB by GeneID:226040See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29713.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057243.5 ENSMUSP00000060863.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057243.5Link to Ensembl Protein Viewer:ENSMUSP00000060863.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000057243Re-query CCDS DB by Protein ID:ENSMUSP00000060863
Original member Current member NCBI NM_183160.3 NP_898983.1 Accepted alive Link to Nucleotide Sequence:NM_183160.3Link to Protein Sequence:NP_898983.1Re-query CCDS DB by Nucleotide ID:NM_183160Re-query CCDS DB by Protein ID:NP_898983Link to BLAST:NP_898983.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898983.1 183 Q8C353 183 100% 0 0

Chromosomal Locations for CCDS 29713.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 24674069 24674343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24677536 24677812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGCAGAACAGGACTGGGCTGATCCTGTGCGCCCTCTCCCTCCTCACCGGCTTCCTGATGATTTGCCTGG
GTGGCTTTTTCATCTCCAACTCCATCTTCCACTCCCAGAGGAATCTGGTTGTGGCCTACGTGCTTCTGCC
CATGGGGTTTGTGATCCTTCTGAGTGGAATTTTCTGGGGCACCTACCGCCAAGCAAATGAAAACAAAGAG
ATGTTCAACCACGTGCTCAGACAGCACCTCGCTTTCCAGGACCTGCCCCTGGCCACTGTAGACAGGCCTG
ACTTTTACCCTCCAGCTTATGAAGAGAGCCTGGATGTTGAGAAACAGGCCTGCCCTGCAGGCAGAGAGCT
CCTAGGATTCCCTCCTCCTCTGTATACAGAGACAAACCTTGAATTTGAACACCTTGAAGACCCACAACCA
GAGGCCCCGCCACCCTACCAGGAGATCATAGCAGATGCAGGGGCTCCAGCGAAGGCACAGGATGCTGAGG
AGCCAAGCAGGGTGCTAAAGGCGGGGACTGCTCTCCAGCTCACAGAACTCACCGGCCGCTGA

Translation (183 aa):
MQNRTGLILCALSLLTGFLMICLGGFFISNSIFHSQRNLVVAYVLLPMGFVILLSGIFWGTYRQANENKE
MFNHVLRQHLAFQDLPLATVDRPDFYPPAYEESLDVEKQACPAGRELLGFPPPLYTETNLEFEHLEDPQP
EAPPPYQEIIADAGAPAKAQDAEEPSRVLKAGTALQLTELTGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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