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Report for CCDS29521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29521.1 Public Mus musculus 19 Cox8a 23 108 98 CCDS HistoryNCBI Gene:12868Re-query CCDS DB by CCDS ID:29521.1Re-query CCDS DB by GeneID:12868See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29521.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039758.5 ENSMUSP00000040717.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039758.5Link to Ensembl Protein Viewer:ENSMUSP00000040717.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000039758Re-query CCDS DB by Protein ID:ENSMUSP00000040717
Original member Current member NCBI NM_007750.2 NP_031776.1 Accepted alive Link to Nucleotide Sequence:NM_007750.2Link to Protein Sequence:NP_031776.1Re-query CCDS DB by Nucleotide ID:NM_007750Re-query CCDS DB by Protein ID:NP_031776Link to BLAST:NP_031776.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031776.1 69 Q64445 69 100% 0 0

Chromosomal Locations for CCDS 29521.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7215389 7215484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7217399 7217512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (210 nt):
ATGTCTGTCCTGACGCCACTGCTGCTGAGGAGCCTGACCGGCTCGGCCCGGCGGCTCATGGTGCCGCGGG
CTCAGGTCCACTCGAAGCCGGCGCGGGAGCAGCTCGGGGTCCTGGATATCACCATTGGGCTCACTTCCTG
CTTCGTGTGTTGTCTTCTGCCTGCGGGCTGGGTCCTGTCACACCTGGAGAGCTACAAGAAGCGGGAGTGA

Translation (69 aa):
MSVLTPLLLRSLTGSARRLMVPRAQVHSKPAREQLGVLDITIGLTSCFVCCLLPAGWVLSHLESYKKRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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