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Report for CCDS29384.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29384.1 Public Mus musculus 18 Dipk1c 23 108 98 CCDS HistoryNCBI Gene:240479Re-query CCDS DB by CCDS ID:29384.1Re-query CCDS DB by GeneID:240479See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29384.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052501.7 ENSMUSP00000057697.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052501.7Link to Ensembl Protein Viewer:ENSMUSP00000057697.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000052501Re-query CCDS DB by Protein ID:ENSMUSP00000057697
Original member Current member EBI ENSMUST00000235504.1 ENSMUSP00000158524.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235504.1Link to Ensembl Protein Viewer:ENSMUSP00000158524.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235504Re-query CCDS DB by Protein ID:ENSMUSP00000158524
Original member NCBI NM_173770.5 NP_776131.1 Updated not alive Link to Nucleotide Sequence:NM_173770.5Link to Protein Sequence:NP_776131.1Re-query CCDS DB by Nucleotide ID:NM_173770Re-query CCDS DB by Protein ID:NP_776131
Current member NCBI NM_173770.6 NP_776131.1 Accepted alive Link to Nucleotide Sequence:NM_173770.6Link to Protein Sequence:NP_776131.1Re-query CCDS DB by Nucleotide ID:NM_173770Re-query CCDS DB by Protein ID:NP_776131Link to BLAST:NP_776131.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776131.1 264 Q8BQT2-2 264 100% 0 0

Chromosomal Locations for CCDS 29384.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 84730279 84730689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84736812 84736976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 84739369 84739587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGGTGGCCGGGGAGGTCAAGAACACGCTAGGCTTGGAGCTGCCCAACAACAGCATAGCCCCGCTATGGC
CTGCCAGGCAGGGCCCTGGCTGGCGGCAACAGCTGGCCAGTGCGTGGTCACTGCTCCAACAGGAGGAATA
CGTATACTTCAGCCTGCTTCCAGATCTGAGCCGCCACATCCTACCGGTGCTGGGATCCTGCGGTCACTTT
TATGCAGTGGAGTACTTGGCTGCTGGTAGCCCTCACCACAAGGCTCTCTTCCCACTGGATGATGCTGGCC
AAGCACAGGCTATTAGCCACATTGCCCTCAGCTTCCTGGACATGGTGAGCCATTTCGACAGTGACTTTTC
CCACCGGCTCCACCTCTGTGATGTCAAACCTGAGAACTTCGCCATCAAGAGGGACTTTACGGTGGTAGCT
ATTGACGTAGACATGGCCTTTTTTGAGCCTAAAATGAGGGAAATCCTTGAGCAGAACTGCACGGGAGATG
AAGATTGCAATTTCTTCGATTGTTTCTCCAAGTGTGATCTCCGAGTGCACAAGTGTGGAGCCCAGCGTGT
CAACAGCAACCTGCAAGTCATCTGTGATAAAATATTCCGACACTGGTTCTCCTCAACACACAGGAGCCCG
GCTGTCTCCCTCCAGCTTCGGCTGCAGCTACAGCAGGCCGTGCAGGAGTGTGCTCAGCACGGGGGCTCCT
CGGGGAATTCCTGGACAGCCTCATCCAGTGTGTTCTGGAAGCTTCGATGGCTCTTGCAGGCCACTCTGAA
AGAACTGCAGGAGGCGGAGAAGTAG

Translation (264 aa):
MVAGEVKNTLGLELPNNSIAPLWPARQGPGWRQQLASAWSLLQQEEYVYFSLLPDLSRHILPVLGSCGHF
YAVEYLAAGSPHHKALFPLDDAGQAQAISHIALSFLDMVSHFDSDFSHRLHLCDVKPENFAIKRDFTVVA
IDVDMAFFEPKMREILEQNCTGDEDCNFFDCFSKCDLRVHKCGAQRVNSNLQVICDKIFRHWFSSTHRSP
AVSLQLRLQLQQAVQECAQHGGSSGNSWTASSSVFWKLRWLLQATLKELQEAEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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