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Report for CCDS29259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29259.1 Public Mus musculus 18 Phax 23 108 98 CCDS HistoryNCBI Gene:56698Re-query CCDS DB by CCDS ID:29259.1Re-query CCDS DB by GeneID:56698See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29259.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008445.6 ENSMUSP00000008445.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008445.6Link to Ensembl Protein Viewer:ENSMUSP00000008445.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000008445Re-query CCDS DB by Protein ID:ENSMUSP00000008445
Original member Current member NCBI NM_019996.4 NP_064380.3 Accepted alive Link to Nucleotide Sequence:NM_019996.4Link to Protein Sequence:NP_064380.3Re-query CCDS DB by Nucleotide ID:NM_019996Re-query CCDS DB by Protein ID:NP_064380Link to BLAST:NP_064380.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064380.3 385 Q9JJT9 385 100% 0 0

Chromosomal Locations for CCDS 29259.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 56573040 56573135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56575462 56576048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56580180 56580300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56584291 56584374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 56586877 56587146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGCGCTGGAAGCTGGCGACATGGAAGAGGGGCAGCTTTCCGACTCGGATTCCGACATGACGGTCGTCC
CCAGCGATAGGCCTCTGCAAATGGCGAAAGTCCTAGGTGGGGGCAGCGCTGCGTGCGCACCGGTGTCACA
TTATCGGACTGTTAAACATGTGGACTCCAGCGAGGAGAGTCTAGATTCCGATGACGATTGCTCTCTTTGG
AAACGCAAGCGACAGAAGTGTCATAATACTCCTCCCAAGCCAGAGCCTTTCCCATTTGGACCAAGTGGTC
AGAAAACGGCTCTCAACGGAGGAAAGAAGGTGAACAACATCTGGGGCGCGGTGCTCCAGGAACAGAATCA
AGATGCGGTGGCCACTGAACTCGGCATCTTGGGAATGGAAGGCTCCATTGACAGAAGCAGGCAGTCTGAG
ACCTATAACTATTTGCTTGCTAAGAAACTTGCTAAGAAGGAATCTCAAGAGTACACAAAGGAATTAGACA
AAGATCTAGATGAATATATGCATGGTGACAAAAAACCAGGGTCAAAGGAAGACGAGAATGGGCAAGGTCA
CCTCAAGCGGAAACGACCTGTCAGAGACAGACTGGGTAACAGAGTGGAAATGAACTACAAAGGGCGCTAT
GAGATCACAGAAGAGGATGCTCCCGAGAAAGTAGCCGATGAGATCGCCTTCAGGTTGCAGGAACCCAAGA
AGGACCTGATAGCCCGAGTAGTGAGGATACTTGGGAACAAAAAGGCCATTGAACTTCTGATGGAAACAGC
TGAAGTCGAGCAAAATGGTGGTCTTTTCATAATGAATGGTAGCCGAAGAAGAACACCCGGTGGAGTCTTT
CTGAATCTCCTGAAGAACACACCCAGCATCAGCGAGGAACAGATTAAGGACATTTTCTACGTTGAAAATC
AAAAGGAATATGAAAATAAAAAAGCTGCTAGAAAAAGAAGAACACAGCTTTTGGGGAAGAAAATGAAACA
AGCTATTAAAAGTCTGAACTTCCAGGAGGACGATGACACATCTCGAGAAACGTTTGCAAGTGACACTAAT
GAGGCCCTGGCCTCTCTCGACGAAGCCCAGGAAGGACCTGGCGAGACCAAGCTGGATGCTGAGGAGGCCA
TTGAGGTGGACCACCCTCAGGACTTGGACATCTTCTGA

Translation (385 aa):
MALEAGDMEEGQLSDSDSDMTVVPSDRPLQMAKVLGGGSAACAPVSHYRTVKHVDSSEESLDSDDDCSLW
KRKRQKCHNTPPKPEPFPFGPSGQKTALNGGKKVNNIWGAVLQEQNQDAVATELGILGMEGSIDRSRQSE
TYNYLLAKKLAKKESQEYTKELDKDLDEYMHGDKKPGSKEDENGQGHLKRKRPVRDRLGNRVEMNYKGRY
EITEEDAPEKVADEIAFRLQEPKKDLIARVVRILGNKKAIELLMETAEVEQNGGLFIMNGSRRRTPGGVF
LNLLKNTPSISEEQIKDIFYVENQKEYENKKAARKRRTQLLGKKMKQAIKSLNFQEDDDTSRETFASDTN
EALASLDEAQEGPGETKLDAEEAIEVDHPQDLDIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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