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Report for CCDS29078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29078.1 Public Mus musculus 18 Dsc1 23 108 98 CCDS HistoryNCBI Gene:13505Re-query CCDS DB by CCDS ID:29078.1Re-query CCDS DB by GeneID:13505See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29078.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038710.5 ENSMUSP00000042303.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038710.5Link to Ensembl Protein Viewer:ENSMUSP00000042303.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038710Re-query CCDS DB by Protein ID:ENSMUSP00000042303
Original member Current member NCBI NM_013504.5 NP_038532.3 Accepted alive Link to Nucleotide Sequence:NM_013504.5Link to Protein Sequence:NP_038532.3Re-query CCDS DB by Nucleotide ID:NM_013504Re-query CCDS DB by Protein ID:NP_038532Link to BLAST:NP_038532.3

Chromosomal Locations for CCDS 29078.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 20085845 20085880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20086649 20086870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20087475 20087599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20088301 20088540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20089538 20089750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20094517 20094659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20094778 20095037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20095972 20096157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20097173 20097307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20099011 20099177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20101824 20101968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20107640 20107795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20108812 20108931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20110044 20110246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20111963 20112047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 20114494 20114556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2499 nt):
ATGGCTGTGGCCTGTGCTGCCCCAGGGAGCACCTTCTCTAAGCAGCTCCTTTTCTTTCTCCTGGTTCTGG
TATTATTTTGTGATGCCTGTCAAAAAGTTTCCCTTCACGTTCCCTCTCATCTTAAGGCTGAAACACCTGT
AGGCAAAGTGAATCTGGAAGAGTGTCTCAAATCACCCAGCCTGATCCTGTCCAGTGACCCAGCCTTCAGA
ATTCTAGAAGACGGCACAATTTACACAACACATGACCTGCTTTTGTCTTCTGAAAAGAGGGGGTTCTCCA
TCTTGCTCTCAGATGGTCAAGGGCAGGAACAAAAGAAGCTAGAAGTTGTACTGTCAGCAAGAGAAAAAAA
GGTTTTTAGGAAAAGACATACCAAAGAGCCAGTACACAACCGCAGTAAGAGAAGATGGGCTCCTATTCCA
TGTTCACTGATGGAGAACTCTTTGGGTCCATTTCCACAACACATTCAGCAGATCCAATCTGATGCTGCCC
AGAATTACACCATCTTTTACTCTATCAGTGGACCAGGAGTAGACAAAGAGCCTTACAATTTGTTCTACAT
AGAGAAAGACACCGGGGACATCTATTGTACCCGAAGCATTGACCGTGAACAGTATGACCAATTTTTGGTA
TATGGATATGCAACAACTGCTGATGGCTATGCCCCAGACTACCCTCTCCCCCTGCTGTTTAAGGTTGAAG
ATGACAATGACAATGCCCCATATTTTGAAACCAAATTAACAGTTTTTAGTGTGCCTGAAAATTGCCGATC
TGGAACTTCAGTGGGACAAGTGACTGCCATAGACAAGGATGAGCCAGGAACTCTACACACTCGTCTGAAG
TACAAAATCTTACAACAAATCCCAGACCAGCCAAAGCACTTCTCCATCCACCCAGACACAGGTGTGATCA
CTACCACCACACCTTTACTGGACAGAGAGAAATGTGACACTTACAAGCTAGTGATGGAGGTACGAGACAT
GGGGGGCCAGCCCTTTGGTCTGTTCACCACAGGAACAATCACCATCTCACTGGAGGATGAGAATGACAAC
TCGCCATACTTCACCCAAACTTCTTATACTACAGAAGTAGAAGAAAACAGAATTGATGTTGAGATTCTGA
GAATGGTGGTGCACGACCAAGATTTGCCCAACACCCCCCACTCGAAGGCGGTATACACAATCCTAAAGGG
GAACGAAAACGGGAACTTCAAAATCACAACGGATCCAAATACAAATGAAGGGGTCTTGTGTGTTGTCAAG
CCACTGAACTATGAAGTCAGCCGCCAAGTCACTCTGCAAATTGGTGTCCTTAATGAAGCCCAGTTCACTA
ACGCTGCCAACGCACAACCACCAACAATGTGCACCACAACTGTCACTGTGAAAATTAAAGACAGAGATGA
GGGCCCTGAGTGCCAGCCACCAGTCAAAGTCATTCAGAGCAAAGATGGACTGCCAGCGGGCCAAGAGCTC
CTGGGCTACAAAGCGGTGGACCCAGAGACAAGCAGTGGTGAAGGCTTAAGGTATGAGATGGTAGGAGATG
AAGATAATTGGTTTGAGATTAACAAAATCACCGGAGACTTGAGAACTGTGAAAGTACTGGACAGAGAGTC
GAAGTTTGTGAAAAACAACCAGTACAATATTTCAGTAGTGGCGACAGATACAGCTGGCCGATCTTGCACA
GGAACACTGGTAGTTCTTCTGGAAGATTTTAATGACCACCCACCACAGATTGACAAGGAAGTGACCATTT
GTCAGCAGGAGAAGGATTTTGCTGTTTTGGAACCTATAGATTTAGATGGGCCAGATAATGGTCCACCTTT
TCAGTTCCTTCTGGATAATTCTTCCAGCAAACTTTGGACTCTAGAATCACAGGATGGTAAACGTGCCATT
CTTCGTCAACGACACAATCTTAATTATAACTATTATTCTGTGCCAATCCAAATACAAGACAGGCATGGTT
TTTCCGCAAAACATGTATTATCAGTGCGAGTGTGTGACTGTACAACTCCAACAGAATGTAGAATGGCTGT
TAAGGAAGAGAGGGATGCTAAACCAAATATAATCCTTGGGAAATGGGCCATTCTTGCCATGGTCCTGGGC
TCTGCATTGCTACTGTGCATTTTGTTTACATGCTTCTGTGTGACCACTACCAAGAGAACAGTCAAGAAAT
GCTTCCCAGATGATGTAGCTCAGCAAAATTTAATTGTATCAAATACTGAAGGACCAGGAGAAGAAGTGAC
GGAAGCCAATATTAGACTCCCCACACAGACAGCCAACATCTGTGATACAAGCATGTCTGTTGGGACTCTT
GGTGGTCAAGGAATCAAAACACAGCAAAGTTTTGAGATGGTCAAAGGAGGCCACACCTTGGAGTCCCACA
AGGGAGGAGTGCTAGGAGCAGCAGAGCCTGGCCGATATGCTTACACAGACTGGCAAACTTTCACTCAACC
TCGGCTTGGTGAAGAATCCATTAGAGGACACACTCTGATTAAAAATTAA

Translation (832 aa):
MAVACAAPGSTFSKQLLFFLLVLVLFCDACQKVSLHVPSHLKAETPVGKVNLEECLKSPSLILSSDPAFR
ILEDGTIYTTHDLLLSSEKRGFSILLSDGQGQEQKKLEVVLSAREKKVFRKRHTKEPVHNRSKRRWAPIP
CSLMENSLGPFPQHIQQIQSDAAQNYTIFYSISGPGVDKEPYNLFYIEKDTGDIYCTRSIDREQYDQFLV
YGYATTADGYAPDYPLPLLFKVEDDNDNAPYFETKLTVFSVPENCRSGTSVGQVTAIDKDEPGTLHTRLK
YKILQQIPDQPKHFSIHPDTGVITTTTPLLDREKCDTYKLVMEVRDMGGQPFGLFTTGTITISLEDENDN
SPYFTQTSYTTEVEENRIDVEILRMVVHDQDLPNTPHSKAVYTILKGNENGNFKITTDPNTNEGVLCVVK
PLNYEVSRQVTLQIGVLNEAQFTNAANAQPPTMCTTTVTVKIKDRDEGPECQPPVKVIQSKDGLPAGQEL
LGYKAVDPETSSGEGLRYEMVGDEDNWFEINKITGDLRTVKVLDRESKFVKNNQYNISVVATDTAGRSCT
GTLVVLLEDFNDHPPQIDKEVTICQQEKDFAVLEPIDLDGPDNGPPFQFLLDNSSSKLWTLESQDGKRAI
LRQRHNLNYNYYSVPIQIQDRHGFSAKHVLSVRVCDCTTPTECRMAVKEERDAKPNIILGKWAILAMVLG
SALLLCILFTCFCVTTTKRTVKKCFPDDVAQQNLIVSNTEGPGEEVTEANIRLPTQTANICDTSMSVGTL
GGQGIKTQQSFEMVKGGHTLESHKGGVLGAAEPGRYAYTDWQTFTQPRLGEESIRGHTLIKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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