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Report for CCDS29046.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29046.1 Public Mus musculus 18 Wac 23 108 98 CCDS HistoryNCBI Gene:225131Re-query CCDS DB by CCDS ID:29046.1Re-query CCDS DB by GeneID:225131See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29046.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167020.7 ENSMUSP00000132117.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167020.7Link to Ensembl Protein Viewer:ENSMUSP00000132117.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167020Re-query CCDS DB by Protein ID:ENSMUSP00000132117
Original member Current member NCBI NM_153085.4 NP_694725.3 Accepted alive Link to Nucleotide Sequence:NM_153085.4Link to Protein Sequence:NP_694725.3Re-query CCDS DB by Nucleotide ID:NM_153085Re-query CCDS DB by Protein ID:NP_694725Link to BLAST:NP_694725.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694725.3 646 Q924H7-1 646 100% 0 0

Chromosomal Locations for CCDS 29046.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 7869575 7869615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7869991 7870027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7871549 7871744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7901496 7901602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7905400 7905515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7905932 7906044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7910516 7910824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7916052 7916297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7917553 7917675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7918433 7918581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7920132 7920250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7921422 7921608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7921856 7921983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7926070 7926139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1941 nt):
ATGGTAATGTATGCGAGGAAACAGCAGAGACTCAGTGATGGCTGTCACGACCGGAGAGGGGACTCTCAGC
CTTTCCAGGCACTTAAGTATTCTTCAAAGAGTCACCCCAGTAGTGGTGATCACAGACATGAAAAGATGCG
AGACGCCGCAGATCCTTCACCACCAAACAAAATGTTGCGGAGATCTAATAGTCCTGAAAACAAATACAGT
GACAGCACAGGTCACAACAAGGCCAAAAACGTGCACACTCAGAGAGTTAGAGAAAGGGACGGTGGGACCA
GTTACTCTCCACAAGAAAACTCACACAACCACAGTGCACTTCATAGTTCAAATTCACATTCTTCTAATCC
AAGCAATAATCCAAGCAAAACTTCAGATGCACCTTATGATTCTGCAGATGATTGGTCTGAGCACATTAGC
TCATCTGGAAAAAAGTACTACTACAATTGTCGCACAGAAGTTTCACAGTGGGAGAAACCAAAAGAGTGGC
TTGAAAGAGAACAGAGACAAAAAGAAGCAAATAAGCTGGCAGTTAATAGTTTCCCAAAAGACAGGGATTA
CAGAAGAGAGGTGATGCAAGCAACAGCCACTAGTGGGTTCACCAGTGGAATGGAAGACAAGCATTCCAGC
GATGCCAGTAGTTTGCTCCCACAGAATATTTTGTCTCAAACAAGCAGACACAATGACAAAGACTACAGAC
TGCCAAGAGCAGAGACTCACAGTAGCTCTACGCCAGTACAGCACCCCATCAAACCAGTGGTTCATCCAAC
CGCTACCCCAAGCACTGTTCCTTCTAGTCCATTTACGCTTCAGTCTGATCACCAGCCAAAGAAATCATTT
GATGCTAATGGAGCATCTACTTTATCCAAACTGCCTACACCCACAGCTTCTCTCCCTGCACAGAAAACAG
AGAGAAAAGAATCTGCTCCAGGAGACAAATCAATATCACATTCTTGCACAACTCCTTCCACATCTTCAGC
CTCTGGCCTGAACCCTACATCTGCGCCTCCGACATCTGCTTCAGCAGTACCTGTTTCTCCCGTTCCACAA
TCAACAATACCTCCATTACTTCAGGACCCAAATCTTTTTAGACAGTTGCTTCCTGCTTTGCAAGCCACGC
TACAGCTTAATAATTCTAATGTGGACATATCCAAAATAAATGAAGTTCTTACAGCAGCTGTAACACAAGC
TTCCCTGCAGTCTATCATCCACAAGTTTCTTACTGCTGGACCATCTGCTTTCAACATCACCTCACTGATT
TCTCAAGCTGCCCAGCTTTCTACACAAGCCCAGCCATCTAATCAGTCTCCAATGTCTCTGACATCTGATG
CTTCATCCCCAAGATCCTATGTGTCTCCAAGAATAAGCACACCTCAAACTAATACAGTCCCTATGAAACC
TTTGATTAGTACTCCACCTGTTTCATCCCAGCCAAAGGTTAGTACTCCAGTAGTTAAGCAAGGACCAGTG
TCACATTCGGCTACACAGCAGCCTGTAACTGCTGACAAGCAGCAGAGCCATGATCCTGTTTCTCCTCGAA
GTCTTCAGCGCTTAAGTAGCCAGAGAAGTCCATCACCTGGTCCAAATCATACTTGTAGTAGTAATGCATC
AACTGCAACTGTTGTACCACAGAATGCATCTGCTAGACCTGCGTGCTCATTAACACCTACTCTAGCAGCG
CACTTCAATGATAATCTCATAAAGCATGTTCAAGGGTGGCCTGCAGACCACGCAGAGAAACAGGCATCAA
GATTGCGTGAAGAAGCCCATAATATGGGAAGTGTACATATGTCAGAAATATGTACTGAGTTAAAAAATTT
GAGATCATTAGTTCGAGTATGTGAAATTCAAGCAACTTTGCGAGAGCAGAGGATACTATTTTTGAGACAA
CAAATTAAGGAACTCGAAAAGCTGAAAAATCAGAATTCCTTCATGGTTTGA

Translation (646 aa):
MVMYARKQQRLSDGCHDRRGDSQPFQALKYSSKSHPSSGDHRHEKMRDAADPSPPNKMLRRSNSPENKYS
DSTGHNKAKNVHTQRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSKTSDAPYDSADDWSEHIS
SSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKLAVNSFPKDRDYRREVMQATATSGFTSGMEDKHSS
DASSLLPQNILSQTSRHNDKDYRLPRAETHSSSTPVQHPIKPVVHPTATPSTVPSSPFTLQSDHQPKKSF
DANGASTLSKLPTPTASLPAQKTERKESAPGDKSISHSCTTPSTSSASGLNPTSAPPTSASAVPVSPVPQ
STIPPLLQDPNLFRQLLPALQATLQLNNSNVDISKINEVLTAAVTQASLQSIIHKFLTAGPSAFNITSLI
SQAAQLSTQAQPSNQSPMSLTSDASSPRSYVSPRISTPQTNTVPMKPLISTPPVSSQPKVSTPVVKQGPV
SHSATQQPVTADKQQSHDPVSPRSLQRLSSQRSPSPGPNHTCSSNASTATVVPQNASARPACSLTPTLAA
HFNDNLIKHVQGWPADHAEKQASRLREEAHNMGSVHMSEICTELKNLRSLVRVCEIQATLREQRILFLRQ
QIKELEKLKNQNSFMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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