NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28936.1 Public Mus musculus 17 Fer 23 108 98 CCDS HistoryNCBI Gene:14158Re-query CCDS DB by CCDS ID:28936.1Re-query CCDS DB by GeneID:14158See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28936.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000129.13 ENSMUSP00000000129.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000129.13Link to Ensembl Protein Viewer:ENSMUSP00000000129.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000129Re-query CCDS DB by Protein ID:ENSMUSP00000000129
Original member NCBI NM_001037997.3 NP_001033086.2 Updated not alive Link to Nucleotide Sequence:NM_001037997.3Link to Protein Sequence:NP_001033086.2Re-query CCDS DB by Nucleotide ID:NM_001037997Re-query CCDS DB by Protein ID:NP_001033086
Current member NCBI NM_001037997.4 NP_001033086.2 Accepted alive Link to Nucleotide Sequence:NM_001037997.4Link to Protein Sequence:NP_001033086.2Re-query CCDS DB by Nucleotide ID:NM_001037997Re-query CCDS DB by Protein ID:NP_001033086Link to BLAST:NP_001033086.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033086.2 823 P70451-1 823 100% 0 0

Chromosomal Locations for CCDS 28936.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 63896077 63896283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63907281 63907454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63911465 63911564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63921613 63921796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63923362 63923499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63924059 63924178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63934290 63934412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63941291 63941480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63973065 63973157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63981480 63981686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63991594 63991716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64029290 64029346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64035447 64035562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64037570 64037664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64078852 64078975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64133441 64133595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64137710 64137832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64138875 64139017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2472 nt):
ATGGGATTTGGGAGTGACCTGAAGAACTCACAGGAAGCTGTGTTAAAGTTGCAAGACTGGGAACTACGGT
TGCTGGAGACAGTGAAGAAATTTATGGCTCTGAGAATAAAGAGTGATAAAGAATATGCATATACTCTACA
GAATCTTTGTAATCAAGTTGATAAAGAAAGCACTGTGCAAGTGAATTATGTCAGCAACGTGTCCAAGTCT
TGGCTACTGATGATTCAGCAGACAGAACAGCTTAGTAGGATAATGAAGACACATGCAGAGGACTTGAACT
CTGGACCCTTGCACAGGCTCACCATGATGATCAAGGACAAGCAGCAAGTGAAGAAGAGCTATGTAGGCAT
TCATCAACAGATAGAGGCAGAGATGATCAAGGTCACAAAGACAGAATTGGAGAAATTAAAATCCAGCTAT
CGACAATTAATAAAAGAAATGAATTCTGCCAAAGAGAAATATAAAGAAGCCTTAGCGAAAGGGAAGGAAA
CAGAAAAGGCCAAGGAGCGCTATGACAAAGCTACAATGAAGCTTCATATGCTGCATAATCAGTATGTGTT
GGCACTGAAGGGGGCACAGCTCCATCAGAGCCAGTACTATGATACCACACTTCCTCTGCTGCTGGACTCC
GTGCAAAAGATGCAAGAAGAAATGATAAAAGCACTAAAAGGTATATTTGATGACTATAGCCAGATAACCA
GCCTTGTTACAGAGGAAATAGTGAATGTCCATAAAGAGATTCAAATGTCTGTTGAACAGATAGACCCTAG
CACCGAATATAATAATTTCATAGATGTTCACAGAACAACAGCTGCTAAAGAACAAGAAATCGAATTTGAT
ACTTCCCTATTAGAAGAAAATGAAAATCTTCAGGCAAATGAGATCATGTGGAATAATTTAACAGCAGACA
GTTTGCAAGTCATGTTGAAGACTTTAGCGGAAGAGCTCACACAGACCCAGCAGATGCTTTTACACAAGGA
GGCGGCCGTCCTGGAGCTAGAGAAGAGGATTGAAGAATCTTTTGAGACCTGTGAAAAGAAGTCTGACATT
GTGCTTCTTCTGGGCCAAAAACAGGCACTTGAAGAGTTGAAACAGTCAGTCCAGCAGTTGCGATGCACTG
AGGCAAAGTGTGCAGCACAGAAAGCTTTGCTGGAGCAAAAAGTACAGGAAAATGATGGGAAAGAACCACC
TCCTGTGGTGAATTACGAAGAAGACGCGCGGTCAGTCACATCCATGGAAAGAAAGGAGAGGCTATCCAAA
TTTGAGTCTATTCGTCATTCAATTGCTGGGATAATTAAGTCTCCAAAGTCGGTACTCGGATCTTCAACAC
AGGTGTGTGATGTGATCTCTGTGGGTGAGAGGCCCCTGGCGGAGCATGACTGGTACCATGGTGCCATCCC
CAGGATAGAGGCACAGGAACTGCTGAAGCAGCAAGGAGACTTCCTGGTGCGGGAGAGCCATGGGAAACCT
GGTGAATATGTCCTTTCTGTATATTCTGACGGACAAAGGAGGCACTTTATCATACAATTTGTCGATAATC
TGTATCGATTCGAGGGCACCGGGTTTTCAAACATTCCCCAGCTTATAGATCACCACTTCAATACAAAGCA
AGTCATCACCAAGAAGTCTGGGGTGGTTCTGCTCAACCCCATCCCAAAGGATAAGAAATGGGTTCTCAAT
CATGAAGATGTTTCATTGGGAGAATTACTGGGCAAGGGGAATTTTGGTGAAGTGTATAAGGGCACACTAA
AGGATAAAACTCCTGTTGCCATTAAAACGTGCAAGGAAGACCTTCCTCAGGAATTAAAAATAAAGTTTCT
ACAGGAAGCCAAAATTCTGAAGCAATATGATCATCCCAATATTGTCAAACTGATAGGCGTGTGCACACAA
AGACAGCCTGTCTACATCATTATGGAACTGGTCCCAGGGGGTGATTTTCTGACCTTCCTGAGGAAGAGGA
AGGACGAGCTGAAGCTGAAGCAGTTGGTGAGATTTTCCTTGGACGTTGCTGCTGGCATGTTGTATCTCGA
GAGCAAGAACTGCATTCACAGGGACCTGGCTGCACGGAACTGCCTGGTGGGTGAAAATAATACTCTGAAA
ATCAGTGACTTTGGAATGTCTCGGCAAGAAGACGGTGGAGTGTATTCATCTTCTGGCTTAAAGCAGATTC
CTATTAAATGGACAGCACCGGAAGCTCTTAATTATGGGAGATACAGTTCTGAAAGTGACGTGTGGAGCTT
CGGCATCCTCCTCTGGGAGACCTTCAGCCTAGGAGTCTGCCCGTACCCTGGAATGACAAACCAGCAAGCG
CGAGAGCAAGTGGAGAGAGGATACCGGATGTCAGCCCCACAGAACTGTCCAGAGGAGGTTTTTACAATCA
TGATGAAGTGTTGGGATTACAAGCCTGAAAACCGCCCTAAGTTCAACGACCTTCACAAAGAGCTCACTGT
CATCAAGAAGATGATCACATAG

Translation (823 aa):
MGFGSDLKNSQEAVLKLQDWELRLLETVKKFMALRIKSDKEYAYTLQNLCNQVDKESTVQVNYVSNVSKS
WLLMIQQTEQLSRIMKTHAEDLNSGPLHRLTMMIKDKQQVKKSYVGIHQQIEAEMIKVTKTELEKLKSSY
RQLIKEMNSAKEKYKEALAKGKETEKAKERYDKATMKLHMLHNQYVLALKGAQLHQSQYYDTTLPLLLDS
VQKMQEEMIKALKGIFDDYSQITSLVTEEIVNVHKEIQMSVEQIDPSTEYNNFIDVHRTTAAKEQEIEFD
TSLLEENENLQANEIMWNNLTADSLQVMLKTLAEELTQTQQMLLHKEAAVLELEKRIEESFETCEKKSDI
VLLLGQKQALEELKQSVQQLRCTEAKCAAQKALLEQKVQENDGKEPPPVVNYEEDARSVTSMERKERLSK
FESIRHSIAGIIKSPKSVLGSSTQVCDVISVGERPLAEHDWYHGAIPRIEAQELLKQQGDFLVRESHGKP
GEYVLSVYSDGQRRHFIIQFVDNLYRFEGTGFSNIPQLIDHHFNTKQVITKKSGVVLLNPIPKDKKWVLN
HEDVSLGELLGKGNFGEVYKGTLKDKTPVAIKTCKEDLPQELKIKFLQEAKILKQYDHPNIVKLIGVCTQ
RQPVYIIMELVPGGDFLTFLRKRKDELKLKQLVRFSLDVAAGMLYLESKNCIHRDLAARNCLVGENNTLK
ISDFGMSRQEDGGVYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSFGILLWETFSLGVCPYPGMTNQQA
REQVERGYRMSAPQNCPEEVFTIMMKCWDYKPENRPKFNDLHKELTVIKKMIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH