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Report for CCDS2879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2879.1 Public Homo sapiens 3 SPATA12 24 110 108 CCDS HistoryNCBI Gene:353324Re-query CCDS DB by CCDS ID:2879.1Re-query CCDS DB by GeneID:353324See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2879.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334325.2 ENSP00000335392.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334325.2Link to Ensembl Protein Viewer:ENSP00000335392.1Re-query CCDS DB by Nucleotide ID:ENST00000334325Re-query CCDS DB by Protein ID:ENSP00000335392
Original member Current member NCBI NM_181727.2 NP_859078.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181727.2Link to Protein Sequence:NP_859078.1Re-query CCDS DB by Nucleotide ID:NM_181727Re-query CCDS DB by Protein ID:NP_859078Link to BLAST:NP_859078.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_859078.1 190 Q7Z6I5 190 100% 0 0

Chromosomal Locations for CCDS 2879.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 57073695 57074267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGTCCAGTTCTGCTCTGACTTGTGGGTCCACCTTAGAAAAGTCAGGAGACACCTGGGAAATGAAGGCAC
TAGACTCTTCCAGACTCGTTCCATGGCCACCCAGAGGCCTTGGGTCATCCACCCAACATCCCAACAAACC
CCACTGTGCACTGGCATCATGCCAGGGTCCAGGTGTCCTGCCAGGAGCAGCCTCTGCCCTCCCAGAGCTG
ACATTTCAGGGGGATGTGTGCCAAAGTGAGACCTGTCAGAGATATTTACAAGCAGCCATCTCTCTTGACA
TCGCTGTATCCCAAATAAATCTTCTGGGAAGACCCTCTTCACCTCCAGCTCTCCTGATACAGCAAGGCAG
TTGTGAGCAAGTTATTCATAACTCTACACCTCAATTTCTTGGTATGGAAGATGGGGATAATGAGAGGACC
ACAGGATGGTTGTGGAGACTGTGTGAGGATATAGATGCCGAGCCCAGTAGCACAGGGTGCAGCCGTTCAA
ACCAACTGACATTTACTGAGGGCTGCTTTGTCAGGTCCCTCTCTACAGTATACTCCAACACACACATACA
CACACATCTGTAA

Translation (190 aa):
MSSSALTCGSTLEKSGDTWEMKALDSSRLVPWPPRGLGSSTQHPNKPHCALASCQGPGVLPGAASALPEL
TFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSSPPALLIQQGSCEQVIHNSTPQFLGMEDGDNERT
TGWLWRLCEDIDAEPSSTGCSRSNQLTFTEGCFVRSLSTVYSNTHIHTHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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