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Report for CCDS28786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28786.1 Public Mus musculus 17 Crisp2 23 108 98 CCDS HistoryNCBI Gene:22024Re-query CCDS DB by CCDS ID:28786.1Re-query CCDS DB by GeneID:22024See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28786.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024724.13 ENSMUSP00000024724.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024724.13Link to Ensembl Protein Viewer:ENSMUSP00000024724.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024724Re-query CCDS DB by Protein ID:ENSMUSP00000024724
Original member Current member EBI ENSMUST00000232709.1 ENSMUSP00000156411.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232709.1Link to Ensembl Protein Viewer:ENSMUSP00000156411.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232709Re-query CCDS DB by Protein ID:ENSMUSP00000156411
Original member Current member EBI ENSMUST00000233529.1 ENSMUSP00000156818.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233529.1Link to Ensembl Protein Viewer:ENSMUSP00000156818.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233529Re-query CCDS DB by Protein ID:ENSMUSP00000156818
Original member Current member NCBI NM_001204071.1 NP_001191000.1 Accepted alive Link to Nucleotide Sequence:NM_001204071.1Link to Protein Sequence:NP_001191000.1Re-query CCDS DB by Nucleotide ID:NM_001204071Re-query CCDS DB by Protein ID:NP_001191000Link to BLAST:NP_001191000.1
Original member Current member NCBI NM_009420.2 NP_033446.1 Accepted alive Link to Nucleotide Sequence:NM_009420.2Link to Protein Sequence:NP_033446.1Re-query CCDS DB by Nucleotide ID:NM_009420Re-query CCDS DB by Protein ID:NP_033446Link to BLAST:NP_033446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191000.1 243 P16563 243 100% 0 0
NP_033446.1 243 P16563 243 100% 0 0

Chromosomal Locations for CCDS 28786.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40765210 40765337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40767286 40767374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40783238 40783335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40783766 40783908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40784992 40785079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40786139 40786255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40790587 40790655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGCTTGGTTCCAGGTAATGCTGTTTGTCTTTGCGTTGCTGCTGCGATCACCACTCACAGAAGGAAAGG
ATCCAGACTTTACTTCTTTGTTAACTAACCAACTACAAGTTCAAAGAGAGATCGTAAATAAACACAATGA
GCTGAGGAGATCAGTTAACCCTACTGGCAGCGACATACTAAAAATGGAATGGAGCATACAAGCAACAACA
AATGCTCAAAAGTGGGCTAATAAGTGTATTTTAGAACACAGTTCTAAAGATGACCGGAAGATCAATATAA
GATGTGGTGAGAATCTCTATATGTCAACTGATCCTACCCTCTGGTCAACTGTAATTCAAAGCTGGTACAA
TGAAAATGAAGATTTTGTTTATGGTGTAGGAGCTAAACCCAATTCAGCTGTCGGACATTACACTCAGCTT
GTTTGGTATTCATCTTTCAAAATTGGATGTGGAATTGCTTACTGTCCCAATCAAGACAACCTGAAATATT
TCTATGTTTGCCATTACTGTCCTATGGGTAACAATGTGATGAAAAAGAGCACCCCATATCAACAAGGAAC
ACCTTGTGCTAGTTGTCCCAATAACTGTGAAAATGGGCTGTGCACCAATAGCTGTGATTTTGAAGATTTA
CTTAGTAACTGTGAATCCTTGAAGACTTCAGCAGGCTGTAAACATGAGTTGCTCAAGACAAAGTGCCAGG
CTACTTGTTTGTGTGAAGACAAAATTCATTAA

Translation (243 aa):
MAWFQVMLFVFALLLRSPLTEGKDPDFTSLLTNQLQVQREIVNKHNELRRSVNPTGSDILKMEWSIQATT
NAQKWANKCILEHSSKDDRKINIRCGENLYMSTDPTLWSTVIQSWYNENEDFVYGVGAKPNSAVGHYTQL
VWYSSFKIGCGIAYCPNQDNLKYFYVCHYCPMGNNVMKKSTPYQQGTPCASCPNNCENGLCTNSCDFEDL
LSNCESLKTSAGCKHELLKTKCQATCLCEDKIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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