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Report for CCDS28771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28771.1 Public Mus musculus 17 Or14j8 23 108 98 CCDS HistoryNCBI Gene:258094Re-query CCDS DB by CCDS ID:28771.1Re-query CCDS DB by GeneID:258094See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28771.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049620.5 ENSMUSP00000092917.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049620.5Link to Ensembl Protein Viewer:ENSMUSP00000092917.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000049620Re-query CCDS DB by Protein ID:ENSMUSP00000092917
Original member Current member NCBI NM_001011829.1 NP_001011829.1 Accepted alive Link to Nucleotide Sequence:NM_001011829.1Link to Protein Sequence:NP_001011829.1Re-query CCDS DB by Nucleotide ID:NM_001011829Re-query CCDS DB by Protein ID:NP_001011829Link to BLAST:NP_001011829.1

Chromosomal Locations for CCDS 28771.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37952051 37953022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGACTGCAAGAAACATGACAACAATGAGTGGATTCCTCCTCGTGGGGTTCTCTGACAACCATGAGCTGC
AGATCTTACAGGCTTTGCTCTTCTTGGTGACATACCTATTGGGCTCAGCAGGGAACTTCATTATTATCAC
CATCACAACACTGGATCCACAGCTCCAGTCTCCAATGTATTACTTTCTGAAGCACCTTTCCATTCTGGAC
CTCTCATCCCTCTCTGTCACAATTCCCCAGTATGTTGACAGTTCCCTGGCACGAAGTGGCTACATTTCAT
ATGCACAGTGCATGCTTCAGATTTTTTTCTTTGCATCTTTTGCCTGGGGAGAGCTGGGCACTCTCACAGT
GATGTCTTATGACCGCTATGTGGCCATCTGCCTCCCACTGCACTATGAGGTCATAATGAGTCCCAGAAAG
TGCACTTGGGCTGTGGCAGCTGTGTGGCTAAGTGGAGGTATCTCAGGAACATTATTCACAGCAAGTACAC
TCTCTATCAGATTCTGTGGGGACAAAATTATTCACCAGTTCTTCTGTGATATCCCGCAATTGCTCAAGCT
CTCCTGCTCTAATGATGACTTTGGAGTACTGGAAGTGTCTATTTTCATGGCTGTAATGGCCTTTGCCTGC
TTTATGGGGATTGCTTTCTCCTATGGCCAGATATTCTCTACAGTTCTCAGGATGCCCTCTGCTGAAGGCA
GATCTAAGGTCTTCTCCACCTGCCTGCCCCATCTTTTCGTTGTTTCATTTTTTCTCTCAACAGGCAGTTG
TGCCTATCTAAAGCCAACCTCAGACTCACCAACTGCTTCAGACCTCATGCTCTCTATCTTTTACACAGTA
TTACCCCCAACTCTCAACCCCTTTATCTATAGTCTGAGAAATAAGTCCTTGAAAGAAGCTGTAAAGAAGT
TATTGTTAAGTGAAGAATTAGTTGGGAAAATTTATGTTTGTTCTGTTTTTAGTGCCTGCTAA

Translation (323 aa):
MTARNMTTMSGFLLVGFSDNHELQILQALLFLVTYLLGSAGNFIIITITTLDPQLQSPMYYFLKHLSILD
LSSLSVTIPQYVDSSLARSGYISYAQCMLQIFFFASFAWGELGTLTVMSYDRYVAICLPLHYEVIMSPRK
CTWAVAAVWLSGGISGTLFTASTLSIRFCGDKIIHQFFCDIPQLLKLSCSNDDFGVLEVSIFMAVMAFAC
FMGIAFSYGQIFSTVLRMPSAEGRSKVFSTCLPHLFVVSFFLSTGSCAYLKPTSDSPTASDLMLSIFYTV
LPPTLNPFIYSLRNKSLKEAVKKLLLSEELVGKIYVCSVFSAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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