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Report for CCDS28693.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28693.1 Public Mus musculus 17 Nfkbil1 23 108 98 CCDS HistoryNCBI Gene:18038Re-query CCDS DB by CCDS ID:28693.1Re-query CCDS DB by GeneID:18038See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28693.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048994.6 ENSMUSP00000035452.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048994.6Link to Ensembl Protein Viewer:ENSMUSP00000035452.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048994Re-query CCDS DB by Protein ID:ENSMUSP00000035452
Original member Current member NCBI NM_010909.5 NP_035039.1 Accepted alive Link to Nucleotide Sequence:NM_010909.5Link to Protein Sequence:NP_035039.1Re-query CCDS DB by Nucleotide ID:NM_010909Re-query CCDS DB by Protein ID:NP_035039Link to BLAST:NP_035039.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035039.1 381 O88995 381 100% 0 0

Chromosomal Locations for CCDS 28693.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35220390 35220976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35221137 35221358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35234952 35235231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35235650 35235706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGAGTAACCCCTCCCCCCAGGCCCCAGAGGAAGAAGCCTCTACGTCTGTCTGTCGGCCCCAGAGTTGTT
CCATGGCCTCCGCTTCCCGCCGGCACCGCCGAGAGCGACGCTTCCGGCGGTACTTGTCTGCAGGACGGCT
GGTGCGAGCCCAGGCTCTCCTCCAGCGACATCCCGGGCTTGATGTGGACGCTGGGCAGCCCCCGCCTCTC
CACAGGGCCTGCGCCCGCCACGATGCCCCTGCCCTGTGCCTGCTGCTGCGTCTCGGCGCTGACCCTGCCC
ACCAGGACCGCCATGGCGACACGGCGCTGCACGCTGCTGCCCGCCAGGGCCCTGATGCTTACACGGACTT
CTTCCTGCCGCTGCTGAGTCGTTGCCCATCTGCCATGGGGATAAAAAATAAGGATGGGGAGACTCCTGGG
CAGATTCTGGGCTGGGGACCCCCCTGGGATTCTGCCGAAGAGGAAGAAGATGAGGAAGTTTCCAAGGAGC
GGGAATGGCGGCAGAAGCTACAAGGCGAGCTGGAGGATGAGTGGCAGGAGGTCATCGGGAGGTTTGAAGA
TGATGCCTCCCGGGACACGCAGGAGCCCGAGTCCTTCTCAGCCTGGTCAGAGCGCCTGGCTCGGGAGCAT
GCCCAGAAGCAGCGGCAGCAGCTGGAGGCAGAGGGATCCTGCCGACCTCCAAGGGCTGAGGGCTCCAGTC
ACAGCTGGCGACAGCACGAGGAGGAACAGCGGCTTTTCCGAGAGCGAGCCCGGGCCAAGGAGAAGGAACT
GTGTGAGAGCCGAGCCAGGAGGGCTCAAGAGGCTCAACGGGACAAAGGGCCAGAGCCTCCCAGGGCTGGG
CCCAGGGCAGAACACCCACGAGGGGCAGAGAGGGGCAGCCTCTGGCGCTTTGGCGATGTGCCCTGGCCCT
GCCCTGGTGGAGGGGACCCAGAGGCCATGGCTGCAGCCTTGGTGGCCAGGGGCCCCCCTCTGGAGGAACA
GGGGGCTCTGAAGAGGTACTTGAGAGTCCAACAGGTCCGGTGGCATCCTGACCGCTTCCTGCAGCGATTC
CGAAGCCAGATTGAGACCTGGGAGCTGGGCCGAGTGATGGGAGCTGTGACAGCCCTTTCTCAGGCCCTGA
ACCGCCACGCAGAAGCCCTCAAGTGA

Translation (381 aa):
MSNPSPQAPEEEASTSVCRPQSCSMASASRRHRRERRFRRYLSAGRLVRAQALLQRHPGLDVDAGQPPPL
HRACARHDAPALCLLLRLGADPAHQDRHGDTALHAAARQGPDAYTDFFLPLLSRCPSAMGIKNKDGETPG
QILGWGPPWDSAEEEEDEEVSKEREWRQKLQGELEDEWQEVIGRFEDDASRDTQEPESFSAWSERLAREH
AQKQRQQLEAEGSCRPPRAEGSSHSWRQHEEEQRLFRERARAKEKELCESRARRAQEAQRDKGPEPPRAG
PRAEHPRGAERGSLWRFGDVPWPCPGGGDPEAMAAALVARGPPLEEQGALKRYLRVQQVRWHPDRFLQRF
RSQIETWELGRVMGAVTALSQALNRHAEALK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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