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Report for CCDS28452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28452.1 Public Mus musculus 17 Mmp25 23 108 98 CCDS HistoryNCBI Gene:240047Re-query CCDS DB by CCDS ID:28452.1Re-query CCDS DB by GeneID:240047See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024696.8 ENSMUSP00000024696.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024696.8Link to Ensembl Protein Viewer:ENSMUSP00000024696.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024696Re-query CCDS DB by Protein ID:ENSMUSP00000024696
Original member NCBI NM_001033339.4 NP_001028511.1 Updated not alive Link to Nucleotide Sequence:NM_001033339.4Link to Protein Sequence:NP_001028511.1Re-query CCDS DB by Nucleotide ID:NM_001033339Re-query CCDS DB by Protein ID:NP_001028511
Current member NCBI NM_001033339.5 NP_001028511.1 Accepted alive Link to Nucleotide Sequence:NM_001033339.5Link to Protein Sequence:NP_001028511.1Re-query CCDS DB by Nucleotide ID:NM_001033339Re-query CCDS DB by Protein ID:NP_001028511Link to BLAST:NP_001028511.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028511.1 615 Q3U435 615 100% 0 0

Chromosomal Locations for CCDS 28452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 23630568 23630836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23631006 23631263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23631343 23631495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23631791 23631873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23632549 23632633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23632734 23632910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23639753 23640042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23640139 23640274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23644039 23644171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23644591 23644854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGTGCTTCCCAGGATCCCAGATCTCTCCTGCCCGTCTCTACTACCTTGTGTCGGCTCCCTGGATCTGCA
CCGGGTCCCTGACCTCCTCCAGACTTCCACGGCGGCGGGAGTCAGGGCCTCTTCGCGTGCCTCCGCGGTC
CGTCCAAGCTGAACGCATCTTGAGGCTGCCGGCTTTCGGTCTCCCGTTGCTGGCGCTTCTGTTGGTTCCG
CTGCTGCCGGTGCGCGCTCAGAATCCCGATGCGAAGGTCGTGAGCATGGGCGTGGAATGGCTGACTCGCT
ATGGCTACCTGCCACCGGCGGATCCTGTCCACGCCCAGATGCAGAGTCTTGAGAAACTGCAGGATGCAAT
CAAAGTCATGCAGAGATTTGCCGGACTACCTGAGACTGGACAAATGGACCCAATGACAATAAAGACCATG
CGCAAGCCCCGGTGCTCCCTGCCTGATGTCCTGGGCGCAGCTGGGCTGGTCAGACGCCGACGTCGCTATT
CTCTGAGTGGCAGTGTTTGGAAGAAACGCACCCTGACATGGAGTATCCGGTCCTTCTCTCAGAAATCCCA
GTTGAGCCCGCAGATTGTTCGGACCCTCCTGAGCTATGCCCTGGCTGTCTGGGCTACTGAATCAGGCCTT
ACATTCCAGGAGGTGAATTCTCAGTACCAGGAGCCTGACATCATTATCCACTTTGCTCGGGCCTACCACC
AGGACAGTTACCCCTTTGACGGGTCTGGTGGCACGTTGGCTCACGCCTTCTTCCCTGGGGAGCACCCTAT
CTCTGGAGACACGCACTTTGATGATGAAGAGACCTGGACTTTTGGGTCAACAGATGATAACGGAATTGAC
CTATTTGCAGTAGCAGTTCATGAATTTGGCCATGCCCTAGGCCTTGGCCACTCTTCTGCACCCAACTCCA
TTATGCGGCCCTTCTACCAGGGCCCGGTGGGTGACCCTGCCACATACCGTTTGCCCCAGGATGACCGTGA
CGGACTGCAGCAGCTCTATGGGAGAGTGTCCCAAAATCCAAATGCCAGGCCCACAAGGAAACCCCTGGTT
CCGCCTCCCCAGCCTCCAGCCATGCCCCCTGACAGCCCCGCCACACCTGTGCCTGACCGCTGTGAGGGCA
ACTTTGATGCCGTTGCCAACATTCGAGGGGAAATTTTCCTCTTCAAAGGCCCATGGTTTTGGCGCCTCCA
ACCCTCAGGACAGCTGGTATCACCCCGCCCTGCTGGGTTGCACCGCTTTTGGGAGGGGCTGCCAACCCAT
GTGAAAGTCATCCAGGCTGCCTATGCCCGACCCCTAGATGGCCGAATCATCCTCTTCAGCGGCCCGCAGT
TCTGGGTGTTCCAGGAACGACAGCTTGAGGGTGCAGCGCGGCCACTGGTAGAGTTTGGGCTGCCCCCAGG
AGAAGACGTGGATGCTGTGTTCTCATGGCCTCACAATGGCAAGACATACCTGATCCGAGGTCAAAAGTAC
TGGCGGTATGACGAGGTGGCCGCCCGCCCAGACCCTGGCTACCCACGTGCCTTGAGTCTCTGGGATGGGG
CGCCCTTTGCCCCAGACGATGTCACCATCAGCAACACAGGTGACACTTACTTTTTCAAGGGCACCCATTT
CTGGCGCTTTGCGGAGGGCAGTGTCAAAGCTGAGTCAGATTCCCCCCAGCCCATTGGGCCCAAGTGGCTG
GACTGCCCTGCCCCCAACTCTGACCCTCGAGTCACCAGTCCCCCGAAAACGACATCCAAAACCCGAAGCT
GTGATTGTCACTGCGAGCTCAATCAAGCCTCAGAGCAGCTGTCGCCCCTCCTGCTGCCTCTCCTACCCCT
AGTGGCTGGAGAGGTCTTTTCTTACTGA

Translation (615 aa):
MCFPGSQISPARLYYLVSAPWICTGSLTSSRLPRRRESGPLRVPPRSVQAERILRLPAFGLPLLALLLVP
LLPVRAQNPDAKVVSMGVEWLTRYGYLPPADPVHAQMQSLEKLQDAIKVMQRFAGLPETGQMDPMTIKTM
RKPRCSLPDVLGAAGLVRRRRRYSLSGSVWKKRTLTWSIRSFSQKSQLSPQIVRTLLSYALAVWATESGL
TFQEVNSQYQEPDIIIHFARAYHQDSYPFDGSGGTLAHAFFPGEHPISGDTHFDDEETWTFGSTDDNGID
LFAVAVHEFGHALGLGHSSAPNSIMRPFYQGPVGDPATYRLPQDDRDGLQQLYGRVSQNPNARPTRKPLV
PPPQPPAMPPDSPATPVPDRCEGNFDAVANIRGEIFLFKGPWFWRLQPSGQLVSPRPAGLHRFWEGLPTH
VKVIQAAYARPLDGRIILFSGPQFWVFQERQLEGAARPLVEFGLPPGEDVDAVFSWPHNGKTYLIRGQKY
WRYDEVAARPDPGYPRALSLWDGAPFAPDDVTISNTGDTYFFKGTHFWRFAEGSVKAESDSPQPIGPKWL
DCPAPNSDPRVTSPPKTTSKTRSCDCHCELNQASEQLSPLLLPLLPLVAGEVFSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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