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Report for CCDS28396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28396.1 Public Mus musculus 17 Mrpl18 23 108 98 CCDS HistoryNCBI Gene:67681Re-query CCDS DB by CCDS ID:28396.1Re-query CCDS DB by GeneID:67681See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28396.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079121.3 ENSMUSP00000078123.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079121.3Link to Ensembl Protein Viewer:ENSMUSP00000078123.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079121Re-query CCDS DB by Protein ID:ENSMUSP00000078123
Original member Current member NCBI NM_026310.3 NP_080586.1 Accepted alive Link to Nucleotide Sequence:NM_026310.3Link to Protein Sequence:NP_080586.1Re-query CCDS DB by Nucleotide ID:NM_026310Re-query CCDS DB by Protein ID:NP_080586Link to BLAST:NP_080586.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080586.1 180 Q9CQL5 180 100% 0 0

Chromosomal Locations for CCDS 28396.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 12911678 12911749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12913770 12914001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12915638 12915824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12915947 12915998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGCGCTTCGGCCGCGGTTCTGGAAATGTCTGTCAGTTTGCAGGAAACTGGAGTGTGGGTTCGCAGCCC
TCTCAACCAGTTCCGTGCCGGCCGTGCAGCCCGACGTGGAGAGTAAGGAAAACGAAGCGGTGGCCCCGGA
GTTCACCAACCGGAACCCTCGGAATCTGGAGCTCTTAGGGGTAGCTCGGAAAGAACGGGGCTGGGCTACC
GTGTGGCCTAACCGTGAGTTCTGGCACAGGTTGCGAGTTGTAAAGACTCAGCATCACGTAGAAGCATTTG
TTGAGCATCTTAACGGCCAGGTTGTTGTTTCAGCATCCACTCGAGAATGGGCTATTAAAAAACACCTTTA
TAGTACCAGAAACGTGGTGGCTTGTGAGAGCATTGGGCGAGTGCTGGCACAGCGGTGCTTAGAAGCAGGA
ATCAACTTCATGGTCTACCAGCCCACCCCGTGGGAGGCGTCCTCAGACTCGATAAAACGTTTACAAAATG
CCATGACAGAAAGTGGCGTGATGCTTCGGGAGCCTCGAAGAATCTATGAATGA

Translation (180 aa):
MALRPRFWKCLSVCRKLECGFAALSTSSVPAVQPDVESKENEAVAPEFTNRNPRNLELLGVARKERGWAT
VWPNREFWHRLRVVKTQHHVEAFVEHLNGQVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAG
INFMVYQPTPWEASSDSIKRLQNAMTESGVMLREPRRIYE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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