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Report for CCDS28372.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28372.2 Public Mus musculus 17 Sytl3 23 108 98 CCDS HistoryNCBI Gene:83672Re-query CCDS DB by CCDS ID:28372.2Re-query CCDS DB by GeneID:83672See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28372.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097430.9 ENSMUSP00000095041.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097430.9Link to Ensembl Protein Viewer:ENSMUSP00000095041.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097430Re-query CCDS DB by Protein ID:ENSMUSP00000095041
Original member NCBI NM_031395.2 NP_113572.1 Updated not alive Link to Nucleotide Sequence:NM_031395.2Link to Protein Sequence:NP_113572.1Re-query CCDS DB by Nucleotide ID:NM_031395Re-query CCDS DB by Protein ID:NP_113572
Current member NCBI NM_031395.3 NP_113572.1 Accepted alive Link to Nucleotide Sequence:NM_031395.3Link to Protein Sequence:NP_113572.1Re-query CCDS DB by Nucleotide ID:NM_031395Re-query CCDS DB by Protein ID:NP_113572Link to BLAST:NP_113572.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113572.1 607 Q99N48-1 607 100% 0 0

Chromosomal Locations for CCDS 28372.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6673886 6673995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6676212 6676430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6687262 6687326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6699653 6699704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6701238 6701304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6702880 6702958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6705894 6706018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6709097 6709231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6715384 6715562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6728239 6728341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6732952 6733122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6734466 6734571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6735378 6735474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6736411 6736616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6737727 6737836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1824 nt):
ATGGCCCACGAAGTGGACCTGGAGTCCTTCAAGGAGTTGGAACGGGACATCATTCTCCGTGTCCTATATC
GTGATCAAACTGTTCAAAGCACCGAGGAGGAAAGGGTCCGGAAACTGAAATCACACCTGCAGCATCTTCG
GTGGAAGGGGGCGAAGAGCTCTAGCCAGGAATACAAGGAAAAGTGCTGTGCACGTTGCCAGCGGGCTCTG
GGCCTTCTGCTGAACCGTGGGGCCGTGTGTCAGGGCTGCAGCCACCGCGTGTGTTCCGAGTGCCGTGTGT
TCCTGCGGAGGACTCGTGCATGGAAGTGCACGGTTTGCTTTGAGGACAGAAACGTGAAAATCAAAACCGG
AGAATGGTTCTTTGAAGAACGAGCCAGGAAATTTCCAACTGCAGGCCGACGCGAGACCGCTGGGGCAAAG
CTCCTGCAATCTTATCAGAGGCTGAGCAAAATCTCTGTGGTCCCTCCGACACCACCACCTTTCAGTGAGA
GCCAGTGCAGCAGCTCCAGCAGGTTACAGGAACTTGGCCACTTCAGAGGATTTAATAAGTCTGTGGAAAA
CTTGTTTCTGTCTGTCACCACCCAGATGAGAAAGCTCTCCAAGTCCCAGAATGACATGACCTCTGAGAAG
CATCTTCTGGCCATGGACCCCAGGCAGTGTGTGGGACACACGGAGAGGCGGAGCCAGTCAGACACTGCAG
TCAACGTGACTTCCAGGAAGGCCAGCACACCCGATATTCTGAAAGCATTCCATCAAGAAGATCCCAAACA
CCCTCCCGACCCTGTTTTGAAGCAAGACACTCCCCCGTCCAGTCCGACACACAGCGCTGTCTTCTCTGGA
GGCTTGAGACACGGAAGCTTAATTAGCATCAACAGCACCTGCACAGAGATGGGTAATTTTGACAATGCTA
ATGTCACTGGAGAAATAGAATTTGCCATTCATTACTGCGTTAAAAGCTGCTCTTTAGAGATATGCATCAA
GACCTGTAAGAACCTTGCCTATGGAGAAGAAAAGAAAAGAAAGTGCAATCCGTATGTCAAGACCTACCTG
CTGCCTGACAGGTCTTCTCAGGGAAAACGCAAGACACGAGTCCAAAAGAACACGCTGGACCCGACTTTCG
AGGAAACCTTGAAGTATCAGGTGGACCCTGGCCAGCTGATGACCCGGAGGCTGCAGGTCTCTGTGTGGCA
CCTAGGCACCCTTGCCCGGAGGGTGTTCCTCGGAGAAGTGATCCTTCCACTGGCCATGTGGGACTTTAAG
GACAGTACGGCACAGAATGCCAGATGGTATCCTCTGCGGGCCAAGGCTGAGAAATACGAAGAGAATATTC
CTCAGAATAATGGAGAACTTGCTGTTCGAGCCAAATTGGTCCTTCCCGCAGGGCCAAGAAAGCCCCAGGA
GGCCCAAGAAGGTCAGCTAGCGCTTAATGGTCAACTGTGTCTGGTTGTGTTGGGAGCCAAGAATTTACCG
GTGAGGTCAGATGGCACCTTAAACTCATTTGTTAAGGGCTGTCTCACCCTGCCAAACCAACAAAAGCTGC
GTGTGAAGTCCCCAGTCCTGAAGAAGCAGGCTTGTCCCCAGTGGAAACACTCCTTTGTGTTTAATGGTGT
GAGCAGTTCTCAGCTGAGACAGTCCACCTTGGAGCTGACTGTCTGGGACCAGGCCATCTTTGGTATGAAC
GACCGTCTGCTCGGGGAAGCCAGGCTTGGTTCAAAGGGAGGTGCTGCGGGTTGTCCCGACTCAGGTTCAC
AGTCCAAGCTTCAGTGGCACAGAGTCCTCTCCAGCCCAAACCTGTGGACAGACATGACCCTCGTCCTGCA
CTGA

Translation (607 aa):
MAHEVDLESFKELERDIILRVLYRDQTVQSTEEERVRKLKSHLQHLRWKGAKSSSQEYKEKCCARCQRAL
GLLLNRGAVCQGCSHRVCSECRVFLRRTRAWKCTVCFEDRNVKIKTGEWFFEERARKFPTAGRRETAGAK
LLQSYQRLSKISVVPPTPPPFSESQCSSSSRLQELGHFRGFNKSVENLFLSVTTQMRKLSKSQNDMTSEK
HLLAMDPRQCVGHTERRSQSDTAVNVTSRKASTPDILKAFHQEDPKHPPDPVLKQDTPPSSPTHSAVFSG
GLRHGSLISINSTCTEMGNFDNANVTGEIEFAIHYCVKSCSLEICIKTCKNLAYGEEKKRKCNPYVKTYL
LPDRSSQGKRKTRVQKNTLDPTFEETLKYQVDPGQLMTRRLQVSVWHLGTLARRVFLGEVILPLAMWDFK
DSTAQNARWYPLRAKAEKYEENIPQNNGELAVRAKLVLPAGPRKPQEAQEGQLALNGQLCLVVLGAKNLP
VRSDGTLNSFVKGCLTLPNQQKLRVKSPVLKKQACPQWKHSFVFNGVSSSQLRQSTLELTVWDQAIFGMN
DRLLGEARLGSKGGAAGCPDSGSQSKLQWHRVLSSPNLWTDMTLVLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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