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Report for CCDS28058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28058.1 Public Mus musculus 16 Polr2h 23 108 98 CCDS HistoryNCBI Gene:245841Re-query CCDS DB by CCDS ID:28058.1Re-query CCDS DB by GeneID:245841See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021405.7 ENSMUSP00000021405.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021405.7Link to Ensembl Protein Viewer:ENSMUSP00000021405.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021405Re-query CCDS DB by Protein ID:ENSMUSP00000021405
Original member NCBI NM_145632.2 NP_663607.1 Updated not alive Link to Nucleotide Sequence:NM_145632.2Link to Protein Sequence:NP_663607.1Re-query CCDS DB by Nucleotide ID:NM_145632Re-query CCDS DB by Protein ID:NP_663607
Current member NCBI NM_145632.3 NP_663607.1 Accepted alive Link to Nucleotide Sequence:NM_145632.3Link to Protein Sequence:NP_663607.1Re-query CCDS DB by Nucleotide ID:NM_145632Re-query CCDS DB by Protein ID:NP_663607Link to BLAST:NP_663607.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663607.1 150 Q923G2 150 100% 0 0

Chromosomal Locations for CCDS 28058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20717922 20717994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20718824 20718907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20718991 20719084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20720519 20720602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20721910 20722027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGGCGGGCATCCTGTTCGAGGATATTTTCGATGTGAAAGACATCGACCCAGAAGGCAAGAAATTTGACC
GAGTATCCCGGCTGCACTGTGAGAGTGAATCTTTCAAGATGGACCTCATCTTAGATGTAAACATTCAGAT
TTACCCTGTGGACTTAGGTGACAAGTTCCGGTTGGTTATAGCTAGTACTTTGTATGAAGATGGTACCTTG
GATGATGGTGAATACAACCCCACAGATGACAGGCCTTCCAGGGCTGACCAGTTTGAGTATGTCATGTATG
GGAAAGTGTACAGGATCGAAGGGGATGAGACCTCCACTGAAGCAGCCACACGCCTCTCTGCGTACGTGTC
CTATGGGGGCCTGCTCATGAGGCTTCAGGGTGATGCCAACAACCTGCATGGATTTGAGGTGGACTCCAGA
GTTTATCTGCTGATGAAGAAGCTGGCCTTCTGA

Translation (150 aa):
MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTL
DDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNLHGFEVDSR
VYLLMKKLAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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