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Report for CCDS28043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28043.1 Public Mus musculus 16 Yeats2 23 108 98 CCDS HistoryNCBI Gene:208146Re-query CCDS DB by CCDS ID:28043.1Re-query CCDS DB by GeneID:208146See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28043.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090052.10 ENSMUSP00000087506.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090052.10Link to Ensembl Protein Viewer:ENSMUSP00000087506.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090052Re-query CCDS DB by Protein ID:ENSMUSP00000087506
Original member Current member NCBI NM_001033237.2 NP_001028409.2 Accepted alive Link to Nucleotide Sequence:NM_001033237.2Link to Protein Sequence:NP_001028409.2Re-query CCDS DB by Nucleotide ID:NM_001033237Re-query CCDS DB by Protein ID:NP_001028409Link to BLAST:NP_001028409.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028409.2 1354 Q3TUF7-3 1354 100% 0 0

Chromosomal Locations for CCDS 28043.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20152968 20153006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20154137 20154229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20156887 20157132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20159137 20159252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20161976 20162137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20171191 20171302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20174495 20174539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20179501 20179675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20186251 20186490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20189339 20189497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20190386 20190489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20193159 20193266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20193644 20193826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20203655 20203913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20206084 20206245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20207624 20207793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20208419 20208577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20210032 20210208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20211569 20211749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20213267 20213395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20214391 20214492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20218384 20218486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20219618 20219691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20221674 20221753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20222740 20222941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20227713 20227939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20228697 20228771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20229498 20229571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20230765 20230873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4065 nt):
ATGAAGAATAAGGAACATGAGATTGATGTCATTGACCAGCGACTGATTGAAGCCAGGAGGATGATGGATA
AGCTCCGGGCCTGCATTGTAGCAAACTATTATGCCTCCGCTGGTCTCCTGAAGGTTTCTGAGGGATTAAA
GACATTTGATCCGATGGCTTTTAATCACCCTGCTATCAAGAAATTTTTGGAATCACCTTCTAGGTCATCA
TCTCCTACCAATCAGAGATCAGAAACACCATCTGCCAATCACTCTGAAAGTGACTCTTTATCTCAGCACA
ATGACTTCCTGTCTGACAAAGACAATAACAGCAACGTGGATGTGGAGGAAAGACCCCCAAGCACCGGGGA
ACAGCGACCGAGCCGAAAGGCAGGAAGGGACACGTCTAGTATCAGTGGCTCCCACAAACGGGAACTACGG
AATGCTGACCTCACAGGAGATGAGACTTCACGACTGTTTGTCAAGAAAACGATAGTAGTCGGCAACGTGT
CCAAGTACATACCTCCAGATAAGCGGGAAGAAAATGACCAGTCAACCCATAAGTGGATGGTATATGTCCG
AGGGTCGCGTAGAGAGCCCAGCATTAATCACTTTGTCAAGAAAGTTTGGTTTTTCCTTCATCCTAGCTAT
AAACCAAACGATCTTGTGGAAGTTAGAGAGCCCCCCTTTCATCTGACTAGAAGAGGCTGGGGTGAGTTTC
CTGTCAGAGTGCAAGTTCACTTTAAGGACAGCCAGAACAAGCGGATAGATATCATACACAACCTGAAGCT
GGATAGAACCTACACTGGCCTACAGACCCTGGGTGCAGAGACGGTGGTGGACGTCGAGCTTCATCGGCAC
TCGCTTGGTGAAGACTCCGTTTATCCTCAGTCGTCGGAATCAGACGTATGTGATGCCCCGCCTCCAACCC
TGACGCTTCCAGCCGCCGTGAAAGCCTCAGCAGTGGCACAGTCCCCTGAGCCGGCAGCTGCTGCCCCTGT
GGGGGAAGGATTCCCAGAGACCACTGAAGCTGAGAGACACAGTACATTTTATTCTTTACCATCTTCGTTG
GAAAGAACACCCACTAAAGTGACAACAGCACAGAAGGTCACCTTCAGTTCACATGGGAATTCTGCCTTCC
AGCCTATCGCATCAAGCTGCAAAATTGTGCCACAAAGTCAGGTGCCTAATCCCGAGTCACCTGGCAAGTC
CTTTCAGCCAATCACCATGAGCTGTAAGATTGTCTCAGGTTCTCCAATATCAACTCCAAGCCCATCACCA
TTACCTCGCACACCAACTTCCACTCCAGTTCATTTGAAGCAAGGCACTGCCAGTTCTGGTGTCAGCAACC
CTCATGTTATTGTGGATAAGCCTGGGCAGGTCATTGGAGCCTCCACTCCAAGTACAGGAAGTCCTACAAG
CAAGCTCCCAGTGGCCTCTCAGGCTTCCCAAGGAACAGGGTCCCCTATTCCTAAGATTCATGGAAGTAGT
TTTTTGACATCTACTGTGAAGCAGGAGGAGTCTTTATTCGCATCTATGCCACCTCTTTGCCCAATTGGTA
GTCACCCTAAAGTGCAGAGCCCCAAAGCTGTGACTGGAGGACTTGGGGCTTTCACAAAGGTGATCATCAA
ACAGGAACCTGGAGAAGCTCCTCATGTGTCCACAACAGGAGCTGCGAGCCAGTCAGCATTCCCTCAGTAT
GTGACCGTGAAAGGGGGTCACATGATAGCTGTGTCCCCTCAAAAGCAGGTCATAAGTGCTGGAGAAGGGA
CCACTCAGTCACCAAAGATTGCACCCTCCAAGGTTGTTGGTGTGCCTGTTGGCTCTGCCTTACCTTCCAC
AGTGAAGCAGGCTGTAGCAATCAGTAGTGGCCAAATCCTTGTCGCCAAGGCCAGCTCTTCTGTCACCAAA
GCTGTTGGTCCAAAACAAGTTGTGACCCAAGGAGTTGCCAAAGCAATCGTGAGTGGAGGTGGAGGGACCA
TTGTCGCTCAGCCAGTGCAGACCTTAACCAAGACTCAGGTCACAGCTGCTGGGCCGCAGAAGAGTGGCTC
CCAGGGCTCAGTAATGGCCACCTTGCAACTACCAGCCACTAATTTGGCCAACCTGGCGAACTTGCCTCCG
GGCACTAAACTGTACCTTACCACGAACAGCAAGAACCCCTCAGGAAAAGGGAAGCTGCTGCTGATTCCTC
AAGGAGCCATCCTGCGAGCTACCAACAATGCCAACCTGCAGTCTGGCTCGGCTGCTGCTGGTGGCAGTGG
CAGCAGTGGTGCAGGGGGAGGCAGTGGAGGTGGCGGTGGCAGCGGAGCAGGAGGAACCCCAAGCACCTCT
GGCCCAGGAGGGGGCCCCCAGCACCTGACTTACACATCCTACATCCTCAAGCAAACCCCCCAGGGTACAT
TTTTAGTTGGCCAACCATCACCCCAAACACCTGGAAAACAACTGACTACTGCATCGGTGGTTCAAGGAAC
ACTGGGAGTCAGTTCATCATCTGCACAGGGACAACAGACACTGAAAGTCATCTCTGGACAGAAAACCACT
TTGTTTACACAGGCAGCCACTGCTGGGCAGGCATCGCTGCTGAAGTTACCAGACAACACCCTGAAGTCAG
TGCCAGCAGCTCCACAGCTCGCCAAGCCTGGGACCACGATGCTTCGAGTGGCAGGGGGGGTGATCACAGC
TGCTCCCTCCCCTGCAGTGGCCTTCTCAGCAAATGGTGCTGTACACCAGTCTGAAGGATCAACCCCTGTG
TCATCCTCTGTTGGTTCTATAATCAAAACTCCTGGTCAGCCACAAGTGTGTGTAAGCCAGGCCACCATGG
CAACCTGCAAGGGCCCCGCTGCTGTTGCCGGCACTGCCGCGTCCCTGGTATCTGCACCAAGCTCCATCTC
TGGGAAAGCCACAGTGTCAGGGTTGCTAAAAGTTCATTCCGCTCAGTCCAGTCCCCAGCAGGCTGTCCTG
ACAATTCCCAGTCAACTCAAGCCACTAAGCATCAATACCTCTGGTGGCGTGCAGACTGTCTTGATGCCTG
TGAATAAAGTGGTTCAGTCGTTTTCTACCAGCAAATTACCTACTACTGTCCTGCCCATAAGTGTTCCAAA
TCAAGCTGCCCCCAGCTCTGCTCCAGTAGCAATTGCCAAAGTGAAGACTGAACCAGAAACTCCTGGGCCA
AACTGCATCTCACAGGAGAACCAGGTAGCAGTGAAAACAGAAGAGAGCTCTGAGCTAAGCAACTACGTCA
TTAAGGTAGACCATTTGGAGACCATCCAGCAGCTCCTGACAGCAGTAGTGAAGAAGATCCCATTAATTAC
TGCAAAAGGTGATGATGCCAGCTGTTTTTCTGCGAAGTCCTTGGAGCAGTATTACGGCTGGAACATTGGG
AAGAGGAGAGCTGCTGAGTGGCAAAGAGCAATGACAGTACGAAAAGTGTTACAAGAAATCCTGGAGAAGA
ATCCAAGATTCCACCACTTGACTCCCCTCAAGACCAAGCACATTGCTCACTGGTGCCGCTGCCACGGTTA
CACCCCACCAGACCCCGAGAGCCTGCGACATGATGGAGACTCCATTGAGGATGTGCTGACCCAGATTGAC
AGTGAACCAGAGTGCCTGTCATCCTTCTCCACTGCTGATGACCTCTGCCGGAAGCTGGAGGATCTGCAGC
AGTTCCAGAAAAGGGAGCCTGAGAACGAGGAAGAAGTGGATATCCTCAGCCTGTCAGAGCCACTGAAGAC
AAACATTAAAAAGGAGCAGGAAGAAAAGCAGGAAGAAATGAGATTCTACCTTCCACCAACCCCAGGCTCT
GGATTTGTTGGTGACATTACACAGAAGATTGGAATCACCCTGCAGCCTGTGGCGCTGCACAGGAACATGT
ATGCCTCAGTGGTAGAGGACATGATCTTAAAGGCCACGGAACAGCTGGTGAGTGACATCCTGAGACAGGC
ACTGGCAGTTGGATACCAGACAGCATCTCCCAACAGGATTCCCAAAGAAATTACAGTGAGTAATATTCAT
CAGGCCATTTGCAACATTCCTTTTCTGGATTTTCTTACAAACAAACACATGGGGAGACTGAATGAGGATC
AGTGA

Translation (1354 aa):
MKNKEHEIDVIDQRLIEARRMMDKLRACIVANYYASAGLLKVSEGLKTFDPMAFNHPAIKKFLESPSRSS
SPTNQRSETPSANHSESDSLSQHNDFLSDKDNNSNVDVEERPPSTGEQRPSRKAGRDTSSISGSHKRELR
NADLTGDETSRLFVKKTIVVGNVSKYIPPDKREENDQSTHKWMVYVRGSRREPSINHFVKKVWFFLHPSY
KPNDLVEVREPPFHLTRRGWGEFPVRVQVHFKDSQNKRIDIIHNLKLDRTYTGLQTLGAETVVDVELHRH
SLGEDSVYPQSSESDVCDAPPPTLTLPAAVKASAVAQSPEPAAAAPVGEGFPETTEAERHSTFYSLPSSL
ERTPTKVTTAQKVTFSSHGNSAFQPIASSCKIVPQSQVPNPESPGKSFQPITMSCKIVSGSPISTPSPSP
LPRTPTSTPVHLKQGTASSGVSNPHVIVDKPGQVIGASTPSTGSPTSKLPVASQASQGTGSPIPKIHGSS
FLTSTVKQEESLFASMPPLCPIGSHPKVQSPKAVTGGLGAFTKVIIKQEPGEAPHVSTTGAASQSAFPQY
VTVKGGHMIAVSPQKQVISAGEGTTQSPKIAPSKVVGVPVGSALPSTVKQAVAISSGQILVAKASSSVTK
AVGPKQVVTQGVAKAIVSGGGGTIVAQPVQTLTKTQVTAAGPQKSGSQGSVMATLQLPATNLANLANLPP
GTKLYLTTNSKNPSGKGKLLLIPQGAILRATNNANLQSGSAAAGGSGSSGAGGGSGGGGGSGAGGTPSTS
GPGGGPQHLTYTSYILKQTPQGTFLVGQPSPQTPGKQLTTASVVQGTLGVSSSSAQGQQTLKVISGQKTT
LFTQAATAGQASLLKLPDNTLKSVPAAPQLAKPGTTMLRVAGGVITAAPSPAVAFSANGAVHQSEGSTPV
SSSVGSIIKTPGQPQVCVSQATMATCKGPAAVAGTAASLVSAPSSISGKATVSGLLKVHSAQSSPQQAVL
TIPSQLKPLSINTSGGVQTVLMPVNKVVQSFSTSKLPTTVLPISVPNQAAPSSAPVAIAKVKTEPETPGP
NCISQENQVAVKTEESSELSNYVIKVDHLETIQQLLTAVVKKIPLITAKGDDASCFSAKSLEQYYGWNIG
KRRAAEWQRAMTVRKVLQEILEKNPRFHHLTPLKTKHIAHWCRCHGYTPPDPESLRHDGDSIEDVLTQID
SEPECLSSFSTADDLCRKLEDLQQFQKREPENEEEVDILSLSEPLKTNIKKEQEEKQEEMRFYLPPTPGS
GFVGDITQKIGITLQPVALHRNMYASVVEDMILKATEQLVSDILRQALAVGYQTASPNRIPKEITVSNIH
QAICNIPFLDFLTNKHMGRLNEDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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