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Report for CCDS27981.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27981.1 Public Mus musculus 16 Pkp2 23 108 98 CCDS HistoryNCBI Gene:67451Re-query CCDS DB by CCDS ID:27981.1Re-query CCDS DB by GeneID:67451See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27981.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039408.2 ENSMUSP00000036890.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039408.2Link to Ensembl Protein Viewer:ENSMUSP00000036890.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000039408Re-query CCDS DB by Protein ID:ENSMUSP00000036890
Original member Current member NCBI NM_026163.2 NP_080439.1 Accepted alive Link to Nucleotide Sequence:NM_026163.2Link to Protein Sequence:NP_080439.1Re-query CCDS DB by Nucleotide ID:NM_026163Re-query CCDS DB by Protein ID:NP_080439Link to BLAST:NP_080439.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080439.1 795 Q9CQ73 795 100% 0 0

Chromosomal Locations for CCDS 27981.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 16213373 16213595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16225301 16225413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16225720 16226291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16230641 16230776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16240500 16240707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16246866 16247043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16260326 16260443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16261604 16261768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16262565 16262738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16267177 16267330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16268518 16268707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16269685 16269772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16272169 16272237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGGCCGTCCCCGGCTCACTGGCCGAGTGTGGCTACATCCGGACTGTGCTGGGCCAGCAGATCCTGGGTC
ACCTGGACAGCTCCAGCCTGGCCTTGCCCTCCGAGGCCAGACTGAGGCTGGCCGGCAGCAGCGGCCGCGG
CGACCCGGCGGCCCGGAGCCAGCGGATCCAGGAGCAGGTGCAGCAGACCCTGGCCCGCCGGGGCCGGAGC
TCTGCGGTCAGCGGGAACCTTCACCGAACCAGCAGTGTCCCTGAGTATGTCTACAAGCTACACGTGGTTG
AGAATGACTTTGTTGGACGGCAGTCACCTGTCACTAGGGACTATGACATGCTTAAGGCTGGAATGACTGC
CACTTATGGAAGTCGCTGGGGGAGAGCAGCAGCACAGTACAGTTCCCAGAAGTCAGTGGAGGAGAGATCC
TGGAGGCAGCCTCTGAGGAGACTTGAGATTTCCCCAGATAGCAGCCCGGAGAGAGCCCACTATGGGCACA
GCGAATACCAGTATGCCTGGCGGAGCCACGTGGTGCCTGGTGGGCGCCTCACCCTGCCACGCTATGCTCG
CTCAGAGATCCTGGGCCTACGCCAGGCTGGCACAGCCCGCAGGCCACCTGGGTGCGGGTCATTCAGCGAT
GCTGTCTTCGACAATGGCCCACTCAAGCCCACAATGCCCACCCACCCTCCTGGCACCAGCCACAGTGCGG
GCAGCTTGTTGGAAGAGACCACTGTGCGCGTGAGCCAGGCTCGGCTTCAAAGCACGCAGAGCAGAACCGC
CCGCTCCTCCTGGCCCAGGAGCTCAGTCCGCAGTAGCCTGCGGGAGCCAGGAAGAATGCTGACCACCGCA
GGCCAGGCTGCCGTGGGCAGCGGGGATGCACATGGGGACAGGAGTGTCTTCGCTGACGCCCAGCTGGGGA
ATGCAGACATCGAAATGACCTTGGAGAGAGCTGTGAATATGCTGGATGCAGACCATGTACCAGTATCCAA
GATCTCTGCCGCAGCTACCTTCATACAGCATGAGAGCTTCCAAAAATCTGAAGCACGGAAAAGGGTCAAT
CAACTTCGAGGCATCCCTAAGCTTCTACAACTGCTCAAACTTCAGAACGAAGATGTTCAACGGGCTGCTT
GTGGGGCCTTGAGAAACTTGGTATTTGAAGACAATGATAACAAGTTGGAGGTAGCTGAACTGAATGGAGT
GCCTCGGCTACTGCAGGTGCTGAAGCAAACCAGAGACTTGGAGACAAAAAAGCAAATAACAGGTTTGCTC
TGGAACCTGTCCTCTAGTGATAAACTCAAGCATCTCATGATAACAGAAGCCTTGCTCACCTTGACAGAGA
GTGTCATCATCCCCTTCTCCGGGTGGCCTGAAGGCGACTACCCCAAAGCCAATGGCTTGCTTGATTTTGA
TATATTCTACAATGTCACTGGATGCCTAAGGAACATGAGCTCTGCTGGCCCCGATGGGAGGAAGATGATG
AGAAGGTGTGATGGTCTCATTGACTCATTGGTCCACTATGTCAGAGGAACTATTGCAGACTACCAGCCAG
ATGATAAGGCCACAGAGAACTGTGTGTGCATTCTTCATAACCTCTCCTACCAGCTGGAGGCAGAGCTCCC
AGAGAAATATTCCCAGAGTATCTACATGCAAAACCGGAATATCCAGACTAACAGTAACAAAAGTATTGGG
TGTTTTGGCAGCCGAAGTAGGAAACTAAAAGAGCAATACCAAGACTTGCAGATGCCAGAGGAAAGGAGCA
ATCCACATGGCATTGAGTGGCTGTGGCATTCCATTGTGATAAGGATGTATTTGTCCTTAATTGCCAAGAG
TACCCGAAACTATACCCAAGAGGCATCACTTGGGGCTCTCCAGAACCTCACAGCAGGAGGCGGCCCGATA
CCCACATTGGTGGCTCGAATGGTTGTCCAAAAGGAAAATGGTCTTCAGCATACACGGAAGATGCTGCACG
TGGGTGATCCCAGTGTGAAAAAGACTGCGGTCTCCCTGCTGAGGAATTTGTCACGGAATCTTTCCCTGCA
GAATGAAATTGCTAAAGAAACTCTACCAGATTTGGTTTCTATAATTCCTGACACAGTCCCAAGTACTGAC
CTTCTCATTGAAACCACAGCCTCTGCTTGCTATACGTTGAACAATTTAATGCAAAATAGTTACCAGAATG
CACGAGACCTTCTGAACACCGGAGGTCTGCAGAAAATTATGACCATCAGCATAGGGGAAGGCTATGCCCC
CAACAAGGCCAGCAAAGCAGCCTCTGTCCTCCTTTACTCTCTGTGGGCACATACAGAGCTGCATCACGCC
TATAAGAAGGCTCAGTTTAAGAAAACAGACTTTGTCAACAGCCGGACTGCCAAAGCCTACCACTCTCTTA
AAGACTGA

Translation (795 aa):
MAVPGSLAECGYIRTVLGQQILGHLDSSSLALPSEARLRLAGSSGRGDPAARSQRIQEQVQQTLARRGRS
SAVSGNLHRTSSVPEYVYKLHVVENDFVGRQSPVTRDYDMLKAGMTATYGSRWGRAAAQYSSQKSVEERS
WRQPLRRLEISPDSSPERAHYGHSEYQYAWRSHVVPGGRLTLPRYARSEILGLRQAGTARRPPGCGSFSD
AVFDNGPLKPTMPTHPPGTSHSAGSLLEETTVRVSQARLQSTQSRTARSSWPRSSVRSSLREPGRMLTTA
GQAAVGSGDAHGDRSVFADAQLGNADIEMTLERAVNMLDADHVPVSKISAAATFIQHESFQKSEARKRVN
QLRGIPKLLQLLKLQNEDVQRAACGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLL
WNLSSSDKLKHLMITEALLTLTESVIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGPDGRKMM
RRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQLEAELPEKYSQSIYMQNRNIQTNSNKSIG
CFGSRSRKLKEQYQDLQMPEERSNPHGIEWLWHSIVIRMYLSLIAKSTRNYTQEASLGALQNLTAGGGPI
PTLVARMVVQKENGLQHTRKMLHVGDPSVKKTAVSLLRNLSRNLSLQNEIAKETLPDLVSIIPDTVPSTD
LLIETTASACYTLNNLMQNSYQNARDLLNTGGLQKIMTISIGEGYAPNKASKAASVLLYSLWAHTELHHA
YKKAQFKKTDFVNSRTAKAYHSLKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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