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Report for CCDS27920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27920.1 Public Mus musculus 16 Glis2 23 108 98 CCDS HistoryNCBI Gene:83396Re-query CCDS DB by CCDS ID:27920.1Re-query CCDS DB by GeneID:83396See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27920.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014447.12 ENSMUSP00000014447.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014447.12Link to Ensembl Protein Viewer:ENSMUSP00000014447.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000014447Re-query CCDS DB by Protein ID:ENSMUSP00000014447
Original member Current member NCBI NM_031184.3 NP_112461.2 Accepted alive Link to Nucleotide Sequence:NM_031184.3Link to Protein Sequence:NP_112461.2Re-query CCDS DB by Nucleotide ID:NM_031184Re-query CCDS DB by Protein ID:NP_112461Link to BLAST:NP_112461.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112461.2 521 Q8VDL9 521 100% 0 0

Chromosomal Locations for CCDS 27920.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4608647 4608818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4610258 4610430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4611280 4611456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4611533 4611666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4611751 4611869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4613386 4614176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGCACTCCTTGGACGAGCCCCTCGACCTAAAGCTGAGCATCACCAAGCTCCGAGCGGCAAGAGAGAAGA
GAGAAAGGACACTGGGTGTGGTCCGGCATCATGCTTTGCATCGAGAGCTGGGCCTGGTGGACGATAGCCC
CGCCCCTGGCTCCCCAGGCTCTCCACCACCAGGTTTCCTGCTGAACCCCAAATTCCCTGAGAAGGTGGAC
GGACGCTTTTCTGCAGCCCCCTTGGTGGACCTCAGCTTGTCACCACCCTCTGGACTGGACTCTCCCAATG
GCAGCAGCTCCCTGTCTCCTGAGTGCCAGGGCAATGGGGACTTGCCTCCACTGCCTACTGCTGTGGATTT
CCAGCCACTTCGCTATTTGGATGGTGTCCCCAGTTCCTTCCAGTTCTTCTTGCCCCTGGGTTCTGGTGGG
GCTCTGCACCTACCTGCTTCCTCCTTCCTTCCCCCCCCCAAGGACAAGTGCCTCTCACCAGAGCTGCCCC
TGGCCAAGCAGCTGGTGTGTCGATGGGCCAAGTGTAACCAGCTCTTTGAGCTCCTCCAAGACCTGGTTGA
CCATGTCAACGACCATCATGTCAAGCCTGAACAGGATGCTCGATACTGCTGTCATTGGGAGGGCTGCGCC
CGCCATGGCCGTGGCTTCAATGCCAGGTACAAGATGCTCATTCACATCCGGACACACACCAACGAGAAGC
CGCACCGATGCCCCACCTGTAACAAGAGCTTCTCCCGCCTGGAGAACCTGAAGATCCACAACCGCTCCCA
CACAGGTGAGAAGCCCTACGTCTGCCCCTATGAGGGCTGCAACAAGCGTTACTCCAACTCCAGTGACCGC
TTCAAGCACACCCGTACCCACTACGTAGACAAGCCCTACTACTGCAAGATGCCCGGCTGTCACAAGCGTT
ACACGGACCCCAGTTCACTGCGCAAACACATCAAGGCCCATGGCCACTTTGTGTCACATGAGCAGCAGGA
GCTCCTGCAGCTGCGCCCACCCCCTAAACCACCACTGCCCACTCCTGACAGTGGCTCCTATGTCAGCGGG
GCTCAGATCATCATCCCGAACCCTGCTGCCCTTTTTGGAGGCCCCAGTCTGCCTGGCCTGCCATTACCTC
TACCTCCTGGCCCCCTTGACCTCAGTGCTCTGGCCTGTGGCAATGGTGGAGGTGGGGGTGGGGGTATTGG
CCCTGGGCTGCCAGGCTCTGTTCTGCCCCTCAATCTGGCCAAGAACCCGCTGTTGCCCTCACCCTTTGGG
GCTGGTGGACTAGGCCTGCCTGTGGTTTCTCTCCTGGGTGGCTCTGCCGGTAGCAAGGCCGAGGGGGAGA
AGGGTCGTGGGTCAGTACCTGCCAGGGTCCTGGGCCTGGAAGATCACAAGACGCCCCTGGAAAGGACGGA
GCGCAGCCGCTCCCGGCCAAGCCCTGATGGACTCCCTTTGCTCCCAGGCACTGTACTGGACCTGTCCACA
GGCAACTCAGCAGCCAGCAGTCCAGAGGTGTTAACTCCTGGCTGGGTGGTCATTCCACCAGGGTCTGTGC
TGCTCAAACCAGCTGTGGTAAACTGA

Translation (521 aa):
MHSLDEPLDLKLSITKLRAAREKRERTLGVVRHHALHRELGLVDDSPAPGSPGSPPPGFLLNPKFPEKVD
GRFSAAPLVDLSLSPPSGLDSPNGSSSLSPECQGNGDLPPLPTAVDFQPLRYLDGVPSSFQFFLPLGSGG
ALHLPASSFLPPPKDKCLSPELPLAKQLVCRWAKCNQLFELLQDLVDHVNDHHVKPEQDARYCCHWEGCA
RHGRGFNARYKMLIHIRTHTNEKPHRCPTCNKSFSRLENLKIHNRSHTGEKPYVCPYEGCNKRYSNSSDR
FKHTRTHYVDKPYYCKMPGCHKRYTDPSSLRKHIKAHGHFVSHEQQELLQLRPPPKPPLPTPDSGSYVSG
AQIIIPNPAALFGGPSLPGLPLPLPPGPLDLSALACGNGGGGGGGIGPGLPGSVLPLNLAKNPLLPSPFG
AGGLGLPVVSLLGGSAGSKAEGEKGRGSVPARVLGLEDHKTPLERTERSRSRPSPDGLPLLPGTVLDLST
GNSAASSPEVLTPGWVVIPPGSVLLKPAVVN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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