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Report for CCDS27773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27773.1 Public Mus musculus 15 Twf1 23 108 98 CCDS HistoryNCBI Gene:19230Re-query CCDS DB by CCDS ID:27773.1Re-query CCDS DB by GeneID:19230See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27773.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023087.12 ENSMUSP00000023087.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023087.12Link to Ensembl Protein Viewer:ENSMUSP00000023087.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023087Re-query CCDS DB by Protein ID:ENSMUSP00000023087
Original member NCBI NM_008971.4 NP_032997.3 Updated not alive Link to Nucleotide Sequence:NM_008971.4Link to Protein Sequence:NP_032997.3Re-query CCDS DB by Nucleotide ID:NM_008971Re-query CCDS DB by Protein ID:NP_032997
Current member NCBI NM_008971.5 NP_032997.3 Accepted alive Link to Nucleotide Sequence:NM_008971.5Link to Protein Sequence:NP_032997.3Re-query CCDS DB by Nucleotide ID:NM_008971Re-query CCDS DB by Protein ID:NP_032997Link to BLAST:NP_032997.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032997.3 350 Q91YR1 350 100% 0 0

Chromosomal Locations for CCDS 27773.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 94579820 94579990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94580944 94581065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94581217 94581367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94582750 94582875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94584381 94584485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94585448 94585543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94586358 94586536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94588228 94588305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94589752 94589776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGTCCCACCAGACAGGCATCCAAGCAAGCGAAGATGTCAAAGAGATCTTTGCCCGAGCCAGAAACGGGA
AATACAGACTTCTGAAAATATCTATCGAAAATGAGCAACTGGTGGTTGGCTCCTGTAGTCCACCTTCAGA
CTCCTGGGAACAGGACTACGACTCCTTTGTCTTGCCCCTGCTGGAGGACAAGCAGCCGTGCTATGTATTA
TTCAGGTTAGACTCTCAGAATGCCCAGGGATATGAATGGATATTCATTGCATGGTCTCCAGATCATTCTC
ATGTACGTCAGAAAATGCTGTATGCGGCAACAAGAGCGACTCTGAAGAAAGAATTTGGAGGTGGCCACAT
TAAAGATGAAGTGTTTGGAACAGTAAAGGAGGACGTATCATTACATGGATATAAAAAGTATTTGCTGTCC
CAGTCTTCCCCTGCCCCGCTGACCGCCGCTGAGGAAGAATTACGGCAGATTAAAATCAACGAGGTCCAAA
CTGATGTGAGTGTGGACACAAAGCACCAGACACTCCAAGGCGTAGCCTTTCCTATTTCTCGAGATGCCTT
CCAGGCTTTGGAGAAGCTGAGTAAGAAGCAGCTCAACTATGTGCAGTTGGAAATAGATATAAAAAATGAA
ACAATAATTTTGGCCAACACAGAAAATACAGAACTGAGAGATTTGCCAAAGAGGATTCCCAAGGATTCAG
CGCGTTACCATTTCTTTCTGTACAAGCATTCCCACGAAGGAGACTACTTAGAGTCCGTAGTTTTTATTTA
TTCGATGCCTGGATACACGTGCAGCATAAGAGAGCGGATGCTGTATTCCAGCTGCAAGAGCCCTCTGCTC
GAGATTGTAGAGCGACAGCTACAGATGGATGTGATCAGAAAGATTGAGATAGACAATGGGGATGAGCTGA
CTGCGGATTTCCTGTACGATGAAGTCCACCCCAAGCAGCATGCACATAAGCAGAGTTTTGCTAAACCGAA
AGGTCCTGCGGGAAAGAGGGGGATCCGAAGATTGATTAGGGGCCCAGCGGAAGCAGAAGCCACTACTGAC
TAG

Translation (350 aa):
MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVL
FRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLS
QSSPAPLTAAEEELRQIKINEVQTDVSVDTKHQTLQGVAFPISRDAFQALEKLSKKQLNYVQLEIDIKNE
TIILANTENTELRDLPKRIPKDSARYHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCKSPLL
EIVERQLQMDVIRKIEIDNGDELTADFLYDEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAEAEATTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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