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Report for CCDS27746.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27746.1 Public Mus musculus 15 Lmf2 23 108 98 CCDS HistoryNCBI Gene:105847Re-query CCDS DB by CCDS ID:27746.1Re-query CCDS DB by GeneID:105847See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27746.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023283.5 ENSMUSP00000023283.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023283.5Link to Ensembl Protein Viewer:ENSMUSP00000023283.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023283Re-query CCDS DB by Protein ID:ENSMUSP00000023283
Original member NCBI NM_178919.4 NP_849250.1 Updated not alive Link to Nucleotide Sequence:NM_178919.4Link to Protein Sequence:NP_849250.1Re-query CCDS DB by Nucleotide ID:NM_178919Re-query CCDS DB by Protein ID:NP_849250
Current member NCBI NM_178919.5 NP_849250.1 Accepted alive Link to Nucleotide Sequence:NM_178919.5Link to Protein Sequence:NP_849250.1Re-query CCDS DB by Nucleotide ID:NM_178919Re-query CCDS DB by Protein ID:NP_849250Link to BLAST:NP_849250.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849250.1 702 Q8C3X8 702 100% 0 0

Chromosomal Locations for CCDS 27746.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 89351591 89351887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89351983 89352079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89352153 89352264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89352359 89352527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89352604 89352786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89352859 89352955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89353034 89353139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89353210 89353344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89353457 89353598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89353829 89354007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89354083 89354297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89354427 89354455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89354564 89354817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89355356 89355449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2109 nt):
ATGGCGAGCTCCCGGGTCCCACAGCAGCTTTTCCTACAGGGTGTGGCCGCTGTCTACTTGTTCGCCTTTG
CGTCCCTCTACACCCAGATCCCAGGCCTCTATGGCCCAGAGGGCATCCTTCCTGCTCGAAGAACACTGCG
GCCCCAAGGCAAGGGCCTGTGGCAGCAGCTGTGGGAAACACCAACGCTGCTGTGGGAGGCACCAAGACTG
GGGCTGGATACTGCCCAAGGTCTGGATTTACTGACCTTATTGGGCACCGTGCTAGCCCTGGGCGCCCTGC
TCCTGAACTCTCTGAGACACCCCTTCGTCTACCTGCTGCTCTGGGTTGCATACCGATCAGCCTACCAGGT
GGGCCAAGTGTTCCTTTATTTCCAGTGGGATTCCCTGCTGCTGGAGACTGGCTTCCTAGCTATACTGGTA
GCCCCGCTGAGGGGGCCTTCCAAACACAAGATTCTCCAGGGTAGATTAGCAGGAGCCTTACCCCATGAAG
ACCTCCCATTCTGGCTCGTGCGCTGGCTGCTGTTTCGACTCATGTTCGCCTCTGGTGTGGTCAAGTTGAC
CAGCCGCTGCCCTACGTGGTGGGGACTCACTGCTCTGACCTACCACTATGAGACTCAGTGCCTGCCCACA
CCCGCTGCCTGGTTTGCTCACCATCTGCCGGTCTGGCTACACAAGCTCAGCGTGGTAGCCACCTTCCTCA
TCGAGATCGCAGTGCCACCCCTGTTCTTTGCTCCTATTCGCCGCCTACGACTTACTGCCTTCTACGCTCA
GGCATTATTGCAAGTCCTGATTATCATCACTGGCAACTACAATTTCTTCAACCTGCTAACCCTGGTGCTC
ACCACTGCCCTCCTGGATGACCGTCACCTGTCTGCTGAGCCTGGCCTCAGATGCCACAAGAAGATGCCCA
CCTCCTGGCCTAAAGCCCTGCTGACCGCGCTGTCCTTACTGCTGGAACTGACTGTCTATGGGCTGCTGGC
CTACGGCACTGTCTACTACTTTGGCCTGGAGGTTGACTGGCAACAGCACATCATCCTCTCGAAAACCACC
TTCACCTTCCATCAGTTCTCCCAGTGGCTGAAGACGGTAACCCTGCCAACTGTGTGGCTAGGGACAGCCT
CCCTGGCCTGGGAGTTGCTTGTTGTCCTCTGGAGGTGGATCCAGGTACAAGGATGGTCACGGAAGTTCTC
TGCGGGTATCCAGCTCTCCGTCCTGGGCACGGCAACAGTGGCCTTGTTCCTGATCAGCCTAGTACCTTAC
TCCTATGTGGAACCTGGGACCCACGGGCGTCTCTGGACTGGGGCTCATCGCCTGTTCGGTTCTGTGGAGC
ACCTACAGCTGGCCAACTCTTACGGCCTTTTCCGTCGGATGACTGGCGTGGGCGGGCGGCCGGAAGTGGT
CCTAGAGGGCAGCTATGACGGACAGCATTGGACAGAGATCGAATTCATGTACAAACCTGGGAATGTGAGC
CGACCACCCCCTTTCCTGACTCCTCACCAGCCACGCCTTGATTGGCAGATGTGGTTCGCAGCCCTTGGCC
CGCATACACACAGCCCCTGGTTCACCGGCCTGGTGCTGCGCCTCCTGCAGGGCAAGGAGCCAGTGATCCG
ACTAGTCCAGAGCCATGTTGCCAACTACCCCTTTCATGAACGGCCACCCACCTACCTGCGGGCCCAGCGC
TATAAGTACTGGTTCTCAAAGCCTGGAGATCAGAGCCGGTGGTGGCACCGCCAGTGGGTAGAGGAATTCT
TCCCATCTGTATCCTTGGGGGACCCAACACTGGAAACCCTGCTCCAACAGTTTGGACTAAAGGATAAGAG
TCCACCCCGGGCCCGCAGCCCCAGCAATGGCCTAGCTCAGACACTGAACTGGGTGCGGACACAGCTGTCT
CCCCTGGAGCCTCCCATCCTGCTCTGGGGGCTCTTCGGGGCAGTGGTGGCTATCCGAGTTGTGCAGACCC
TACTCGCCCCCCGCCCGCTCCAGTCCTCAAAACAGACTAGAGAGGAAAAACGTAAGCAAACCTCCAAGAA
GGATTCCAGAGCCGCCTCTGAGCAGGCTGCCGCCAACAGCAACAGCAGGGACTCCTGGGCCCCTCGGCGG
AAAAAATAG

Translation (702 aa):
MASSRVPQQLFLQGVAAVYLFAFASLYTQIPGLYGPEGILPARRTLRPQGKGLWQQLWETPTLLWEAPRL
GLDTAQGLDLLTLLGTVLALGALLLNSLRHPFVYLLLWVAYRSAYQVGQVFLYFQWDSLLLETGFLAILV
APLRGPSKHKILQGRLAGALPHEDLPFWLVRWLLFRLMFASGVVKLTSRCPTWWGLTALTYHYETQCLPT
PAAWFAHHLPVWLHKLSVVATFLIEIAVPPLFFAPIRRLRLTAFYAQALLQVLIIITGNYNFFNLLTLVL
TTALLDDRHLSAEPGLRCHKKMPTSWPKALLTALSLLLELTVYGLLAYGTVYYFGLEVDWQQHIILSKTT
FTFHQFSQWLKTVTLPTVWLGTASLAWELLVVLWRWIQVQGWSRKFSAGIQLSVLGTATVALFLISLVPY
SYVEPGTHGRLWTGAHRLFGSVEHLQLANSYGLFRRMTGVGGRPEVVLEGSYDGQHWTEIEFMYKPGNVS
RPPPFLTPHQPRLDWQMWFAALGPHTHSPWFTGLVLRLLQGKEPVIRLVQSHVANYPFHERPPTYLRAQR
YKYWFSKPGDQSRWWHRQWVEEFFPSVSLGDPTLETLLQQFGLKDKSPPRARSPSNGLAQTLNWVRTQLS
PLEPPILLWGLFGAVVAIRVVQTLLAPRPLQSSKQTREEKRKQTSKKDSRAASEQAAANSNSRDSWAPRR
KK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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