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Report for CCDS27732.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27732.1 Public Mus musculus 15 Alg12 23 108 98 CCDS HistoryNCBI Gene:223774Re-query CCDS DB by CCDS ID:27732.1Re-query CCDS DB by GeneID:223774See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27732.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043087.14 ENSMUSP00000043480.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043087.14Link to Ensembl Protein Viewer:ENSMUSP00000043480.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043087Re-query CCDS DB by Protein ID:ENSMUSP00000043480
Original member NCBI NM_145477.2 NP_663452.1 Updated not alive Link to Nucleotide Sequence:NM_145477.2Link to Protein Sequence:NP_663452.1Re-query CCDS DB by Nucleotide ID:NM_145477Re-query CCDS DB by Protein ID:NP_663452
Current member NCBI NM_145477.3 NP_663452.1 Accepted alive Link to Nucleotide Sequence:NM_145477.3Link to Protein Sequence:NP_663452.1Re-query CCDS DB by Nucleotide ID:NM_145477Re-query CCDS DB by Protein ID:NP_663452Link to BLAST:NP_663452.1

Chromosomal Locations for CCDS 27732.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 88805829 88806054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88806399 88806474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88806558 88806721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88814429 88814648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88815294 88815467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88815858 88815990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 88816067 88816231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGCTGGCAAGAAGTCATCGGGCAAGCGGTCATGGCCGCTTCTGGGGCTGCTGGTCACTGTAGCCACCA
TCCACCTGGTTATATGTCCCTACACCAAGGTAGAAGAGAGCTTCAACCTTCAGGCCACACATGACCTCCT
GTACCACCAGCTGGACATAGACAAGTACGACCACCACGAGTTTCCTGGAGTTGTTCCTAGGACGTTCCTC
GGGCCGCTGGTGATCGCAGCGTTCTCCAGCCCCGTGGTTTATGTGCTCTCGCTTTTAGAAGTATCCAAAT
TTTATTCTCAGCTGATAGTCAGAGGAGTCCTTGGGCTTGGTGTGATTTCTGGACTCTGGACATTACAAAA
GGAAGTGAGACAGCAGTTCGGAGCCACGGTGGCTGTCATGTTCTGCTGGATATCAGCCACACAGTTTCAT
CTCATGTTCTACTGTACGAGGACACTCCCCAACGTGTTGGCCCTGGCTGTGGTCTTACCAGCCCTCACAG
CCTGGCTGCAGCGGAGGTGGGCCCTGTTTGTCTGGCTCTCAGCCTTCGTCATCATTGGCTTCAGGGCTGA
GCTGGCCATGCTGCTGGGCATTGCGCTGCTGCTGACCTTGTACCAAAGAAGACTGACGGTGGCCAGAGTG
CTCCGACACGCCATCCCAGCAGGGCTTCTCTGTCTAGGCAAGTTGGCATCTCTGGTTTGCCTCCTGAATA
AAAAGTCTTGGCCATACAAGGTGAGAGCTATGCTGGTGACAGGGCATATCTTGGTGAATGTGGCATATAC
AGCCACGTCCCTCTATGTGTCTCATTTCAACTACCCTGGTGGGGTTGCGATGCAGCAGCTACATGAGCTG
GTACCACCTCAGACAGATGTCCTTCTTCACATTGATGTGGCTGCTGCCCAGACAGGAGTGTCACGGTTTC
TACAGGTCAATGATGACTGGAGGTATGACAAGAGTGAAGATGTGGGAGCAGCGGCCATGCTGAACTACAC
CCACATCCTCATGGAGGCAGTGCCTGGGCACCCGGCCCTCTACAGGGACACACATCGAGTCCTGGCCAGT
ATTGAGGGCACTACAGGTATAAGCCTGAATTTGATGAAACTGCCACCCTTTGATGTCAACCTGCAGACAA
AGCTGGTACTTCTAGAGCGGCTGCTTAGGCCAGCCTGA

Translation (385 aa):
MAGKKSSGKRSWPLLGLLVTVATIHLVICPYTKVEESFNLQATHDLLYHQLDIDKYDHHEFPGVVPRTFL
GPLVIAAFSSPVVYVLSLLEVSKFYSQLIVRGVLGLGVISGLWTLQKEVRQQFGATVAVMFCWISATQFH
LMFYCTRTLPNVLALAVVLPALTAWLQRRWALFVWLSAFVIIGFRAELAMLLGIALLLTLYQRRLTVARV
LRHAIPAGLLCLGKLASLVCLLNKKSWPYKVRAMLVTGHILVNVAYTATSLYVSHFNYPGGVAMQQLHEL
VPPQTDVLLHIDVAAAQTGVSRFLQVNDDWRYDKSEDVGAAAMLNYTHILMEAVPGHPALYRDTHRVLAS
IEGTTGISLNLMKLPPFDVNLQTKLVLLERLLRPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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