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Report for CCDS27670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27670.1 Public Mus musculus 15 Rangap1 23 108 98 CCDS HistoryNCBI Gene:19387Re-query CCDS DB by CCDS ID:27670.1Re-query CCDS DB by GeneID:19387See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27670.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052374.12 ENSMUSP00000057771.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052374.12Link to Ensembl Protein Viewer:ENSMUSP00000057771.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000052374Re-query CCDS DB by Protein ID:ENSMUSP00000057771
Original member Current member EBI ENSMUST00000170134.8 ENSMUSP00000126849.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170134.8Link to Ensembl Protein Viewer:ENSMUSP00000126849.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170134Re-query CCDS DB by Protein ID:ENSMUSP00000126849
Original member Current member EBI ENSMUST00000171115.2 ENSMUSP00000130046.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171115.2Link to Ensembl Protein Viewer:ENSMUSP00000130046.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171115Re-query CCDS DB by Protein ID:ENSMUSP00000130046
Original member Current member NCBI NM_001146174.1 NP_001139646.1 Accepted alive Link to Nucleotide Sequence:NM_001146174.1Link to Protein Sequence:NP_001139646.1Re-query CCDS DB by Nucleotide ID:NM_001146174Re-query CCDS DB by Protein ID:NP_001139646Link to BLAST:NP_001139646.1
Original member Current member NCBI NM_011241.4 NP_035371.4 Accepted alive Link to Nucleotide Sequence:NM_011241.4Link to Protein Sequence:NP_035371.4Re-query CCDS DB by Nucleotide ID:NM_011241Re-query CCDS DB by Protein ID:NP_035371Link to BLAST:NP_035371.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139646.1 589 P46061 589 100% 0 0
NP_035371.4 589 P46061 589 100% 0 0

Chromosomal Locations for CCDS 27670.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81705189 81705258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81705453 81705574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81705660 81705748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81706401 81706503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81709487 81709606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81710361 81710553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81711474 81711558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81711642 81711741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81712022 81712135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81712819 81712977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81716567 81716701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81718743 81718922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81720607 81720666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81721899 81722026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81724486 81724597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGGCCTCTGAAGACATTGCCAAACTGGCAGAGACCCTGGCTAAAACTCAGGTAGCCGGAGGGCAGCTGA
GTTTTAAGGGCAAGGGTCTCAAACTAAATACTGCAGAAGATGCTAAAGATGTGATTAAGGAGATTGAAGA
GTTTGACGGCCTCGAAGCTCTACGATTGGAGGGCAACACGGTGGGCGTGGAAGCGGCCAGAGTCATCGCC
AAGGCCTTAGAGAAGAAGTCTGAGCTGAAGCGATGCCACTGGAGTGACATGTTCACAGGAAGGCTTCGGT
CTGAGATCCCACCAGCTCTGATCTCACTAGGGGAGGGACTCATCACTGCAGGAGCACAGCTGGTGGAACT
GGACCTCAGTGACAACGCATTTGGACCCGATGGAGTGCGAGGCTTCGAGGCCCTCCTCAAGAGCCCAGCC
TGCTTCACCCTACAGGAACTCAAGCTTAACAACTGTGGCATGGGCATCGGGGGTGGCAAGATTCTGGCAG
CAGCTCTGACTGAGTGTCACCGCAAGTCCAGTGCCCAAGGCAAGCCCCTGGCCCTGAAGGTGTTTGTGGC
TGGCAGAAATCGCCTGGAGAATGACGGAGCCACTGCACTGGCAGAAGCTTTTGGGATCATCGGGACTCTG
GAAGAGGTGCATATGCCACAGAACGGAATTAACCATCCTGGTGTCACAGCCCTGGCCCAGGCCTTTGCCA
TCAACCCCCTGTTGCGAGTCATCAACCTAAATGACAACACCTTCACTGAGAAGGGTGGGGTGGCCATGGC
TGAGACTCTGAAGACTCTGCGACAAGTGGAAGTGATCAATTTTGGAGACTGCCTGGTGCGCTCTAAGGGT
GCCGTTGCCATCGCAGATGCTGTCCGTGGTGGCCTGCCCAAGCTAAAGGAGCTGAATCTGTCGTTCTGCG
AAATCAAGAGAGATGCTGCCCTGGTTGTTGCTGAGGCTGTGGCCGACAAGGCTGAGCTGGAGAAGCTGGA
CCTCAATGGCAATGCCCTCGGAGAAGAGGGCTGTGAGCAGCTTCAGGAGGTGATGGACAGCTTCAATATG
GCCAAGGTGCTGGCATCCCTCAGTGATGATGAGGGAGAGGATGAAGATGAGGAGGAAGAAGGAGAAGAGG
ATGATGAGGAGGAGGAAGATGAAGAGGATGAGGAAGATGATGATGAGGAGGAGGAGGAGCAGGAGGAAGA
GGAAGAGCCTCCGCAGAGAGGGTCAGGGGAGGAGCCGGCTACACCCTCGAGGAAGATCCTGGACCCTAAC
AGTGGGGAGCCAGCTCCCGTGCTGTCCTCCCCGACTCCCACAGACCTCTCCACCTTCCTGTCATTCCCCT
CCCCAGAGAAGCTGCTGCGTCTGGGTCCCAAGGTCTCGGTGCTGATAGTCCAGCAGACTGATACCTCCGA
CCCAGAGAAGGTTGTTTCAGCCTTCCTGAAGGTGGCATCTGTGTTCAGGGATGACGCCTCAGTAAAGACC
GCAGTGCTGGATGCCATCGATGCCCTCATGAAGAAGGCCTTCAGCTGCTCCTCTTTCAATTCCAACACCT
TCCTTACCAGGCTGCTCATCCACATGGGTCTGCTCAAGAGTGAAGACAAGATCAAGGCCATACCCAGCCT
GCATGGCCCCCTGATGGTGTTGAACCACGTGGTGAGGCAGGACTATTTCCCCAAGGCCCTTGCACCCCTG
CTCTTGGCATTTGTGACAAAGCCCAATGGCGCGCTGGAAACCTGCTCCTTTGCCCGCCACAATCTGCTGC
AGACGCTATACAACATCTAG

Translation (589 aa):
MASEDIAKLAETLAKTQVAGGQLSFKGKGLKLNTAEDAKDVIKEIEEFDGLEALRLEGNTVGVEAARVIA
KALEKKSELKRCHWSDMFTGRLRSEIPPALISLGEGLITAGAQLVELDLSDNAFGPDGVRGFEALLKSPA
CFTLQELKLNNCGMGIGGGKILAAALTECHRKSSAQGKPLALKVFVAGRNRLENDGATALAEAFGIIGTL
EEVHMPQNGINHPGVTALAQAFAINPLLRVINLNDNTFTEKGGVAMAETLKTLRQVEVINFGDCLVRSKG
AVAIADAVRGGLPKLKELNLSFCEIKRDAALVVAEAVADKAELEKLDLNGNALGEEGCEQLQEVMDSFNM
AKVLASLSDDEGEDEDEEEEGEEDDEEEEDEEDEEDDDEEEEEQEEEEEPPQRGSGEEPATPSRKILDPN
SGEPAPVLSSPTPTDLSTFLSFPSPEKLLRLGPKVSVLIVQQTDTSDPEKVVSAFLKVASVFRDDASVKT
AVLDAIDALMKKAFSCSSFNSNTFLTRLLIHMGLLKSEDKIKAIPSLHGPLMVLNHVVRQDYFPKALAPL
LLAFVTKPNGALETCSFARHNLLQTLYNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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