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Report for CCDS27615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27615.1 Public Mus musculus 15 Mpst 23 108 98 CCDS HistoryNCBI Gene:246221Re-query CCDS DB by CCDS ID:27615.1Re-query CCDS DB by GeneID:246221See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27615.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043865.7 ENSMUSP00000043061.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043865.7Link to Ensembl Protein Viewer:ENSMUSP00000043061.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043865Re-query CCDS DB by Protein ID:ENSMUSP00000043061
Original member Current member EBI ENSMUST00000169133.7 ENSMUSP00000128075.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169133.7Link to Ensembl Protein Viewer:ENSMUSP00000128075.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169133Re-query CCDS DB by Protein ID:ENSMUSP00000128075
Original member Current member EBI ENSMUST00000167140.7 ENSMUSP00000130493.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167140.7Link to Ensembl Protein Viewer:ENSMUSP00000130493.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167140Re-query CCDS DB by Protein ID:ENSMUSP00000130493
Original member Current member EBI ENSMUST00000229739.1 ENSMUSP00000155371.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229739.1Link to Ensembl Protein Viewer:ENSMUSP00000155371.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229739Re-query CCDS DB by Protein ID:ENSMUSP00000155371
Original member NCBI NM_001162492.1 NP_001155964.1 Updated not alive Link to Nucleotide Sequence:NM_001162492.1Link to Protein Sequence:NP_001155964.1Re-query CCDS DB by Nucleotide ID:NM_001162492Re-query CCDS DB by Protein ID:NP_001155964
Current member NCBI NM_001162492.2 NP_001155964.1 Accepted alive Link to Nucleotide Sequence:NM_001162492.2Link to Protein Sequence:NP_001155964.1Re-query CCDS DB by Nucleotide ID:NM_001162492Re-query CCDS DB by Protein ID:NP_001155964Link to BLAST:NP_001155964.1
Original member NCBI NM_001162493.1 NP_001155965.1 Updated not alive Link to Nucleotide Sequence:NM_001162493.1Link to Protein Sequence:NP_001155965.1Re-query CCDS DB by Nucleotide ID:NM_001162493Re-query CCDS DB by Protein ID:NP_001155965
Current member NCBI NM_001162493.2 NP_001155965.1 Accepted alive Link to Nucleotide Sequence:NM_001162493.2Link to Protein Sequence:NP_001155965.1Re-query CCDS DB by Nucleotide ID:NM_001162493Re-query CCDS DB by Protein ID:NP_001155965Link to BLAST:NP_001155965.1
Original member NCBI NM_138670.3 NP_619611.3 Updated not alive Link to Nucleotide Sequence:NM_138670.3Link to Protein Sequence:NP_619611.3Re-query CCDS DB by Nucleotide ID:NM_138670Re-query CCDS DB by Protein ID:NP_619611
Current member NCBI NM_138670.4 NP_619611.3 Accepted alive Link to Nucleotide Sequence:NM_138670.4Link to Protein Sequence:NP_619611.3Re-query CCDS DB by Nucleotide ID:NM_138670Re-query CCDS DB by Protein ID:NP_619611Link to BLAST:NP_619611.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155964.1 297 Q99J99 297 100% 0 0
NP_001155965.1 297 Q99J99 297 100% 0 0
NP_619611.3 297 Q99J99 297 100% 0 0

Chromosomal Locations for CCDS 27615.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78410070 78410664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78413379 78413677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGCCGCCCCGCAACTTTTCCGAGCTCTGGTGTCTGCGCAGTGGGTGGCGGAGGCTCTGAAGGCCCCGC
GCTCCTCACAGCCGCTGAAGTTACTGGACGCGTCCTGGTACCTACCCAAGCTGGGCCGCGATGCACGACG
CGAGTTTGAGGAGCGCCACATCCCGGGCGCCGCCTTCTTCGACATCGATCGTTGCAGTGACCACACGTCC
CCCTACGACCACATGCTGCCTAACGCCACGCACTTTGCCGACTACGCGGGCAGCTTGGGCGTGAGCGCCG
CCACGCACGTCGTGATCTACGACGACAGTGACCAGGGCCTCTATTCCGCTCCGCGGGTCTGGTGGATGTT
CCGCGCCTTCGGCCACCACTCTGTGTCATTGCTGGACGGCGGCTTCCGCCACTGGCTGAATCAGAACCTG
CCAATCAGCTCCGGCAAAAGCCACTCGGAGCCCGCGGAGTTCAGCGCGCAGCTCGATCCCTCTTTCATCA
AGACCCACGAGGACATCCTGGAGAACTTGGATGCCCGGCGCTTCCAGGTGGTGGACGCCCGCGCAGCTGG
CCGTTTCCAAGGCACCCAGCCAGAACCCCGAGATGGCATCGAACCTGGCCACATCCCTGGCTCAGTAAAC
ATCCCGTTCACTGAATTCCTGACCAACGAAGGCCTGGAGAAGAGCCCAGAGGAGATCAAACGCCTGTTTA
AGGAGAAGAAGGTGGACCTGTCTAAGCCCTTGGTAGCCACGTGTGGCTCCGGTGTCACAGCCTGCCACGT
GGTCCTGGGGGCCTTCCTCTGTGGCAAGTCAGACGTGCCTGTCTATGATGGCTCCTGGGTAGAGTGGTAC
ATGCGTGCCCAGCCAGAGCATATCATCTCTGAGGGCCGAGGGAAGACCCAGTGA

Translation (297 aa):
MAAPQLFRALVSAQWVAEALKAPRSSQPLKLLDASWYLPKLGRDARREFEERHIPGAAFFDIDRCSDHTS
PYDHMLPNATHFADYAGSLGVSAATHVVIYDDSDQGLYSAPRVWWMFRAFGHHSVSLLDGGFRHWLNQNL
PISSGKSHSEPAEFSAQLDPSFIKTHEDILENLDARRFQVVDARAAGRFQGTQPEPRDGIEPGHIPGSVN
IPFTEFLTNEGLEKSPEEIKRLFKEKKVDLSKPLVATCGSGVTACHVVLGAFLCGKSDVPVYDGSWVEWY
MRAQPEHIISEGRGKTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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