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Report for CCDS27493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27493.1 Public Mus musculus 15 Tmem65 23 108 98 CCDS HistoryNCBI Gene:74868Re-query CCDS DB by CCDS ID:27493.1Re-query CCDS DB by GeneID:74868See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27493.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072113.5 ENSMUSP00000071984.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072113.5Link to Ensembl Protein Viewer:ENSMUSP00000071984.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072113Re-query CCDS DB by Protein ID:ENSMUSP00000071984
Original member Current member NCBI NM_175212.4 NP_780421.2 Accepted alive Link to Nucleotide Sequence:NM_175212.4Link to Protein Sequence:NP_780421.2Re-query CCDS DB by Nucleotide ID:NM_175212Re-query CCDS DB by Protein ID:NP_780421Link to BLAST:NP_780421.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780421.2 234 Q4VAE3 234 100% 0 0

Chromosomal Locations for CCDS 27493.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 58784909 58785010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58787110 58787215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58789386 58789428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58790155 58790209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58794342 58794409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58797201 58797245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58822843 58823128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGTCCCGGCTGCTGCCGCTGCTGGGGAGCCGGACGGCGCGCAGCCTGAGGCCCGGCCCTGCCGCCGCGC
CCCGCCTGCCGTCCTGGTGCTGCTGCGGCCGGGGACTGCTGGCGCTCGGGGTTCCCGGCGGTCCCCGGCT
TCTGGGCACACACCCCAAGAAGGAGCCCATGGAGGCGCTGAACACGGCGCAGGGCGCGCGCGACTTCATC
TACAGCCTGCACTCCACGGAGAGGAGCTGCTTGCTCAAAGAGCTGCACCGCTTCGAGTCCATTGCCATCG
CACAAGAAAAATTGGAAGCTCTACCACCCACTCCAGGACAGCTGAGATATGTATTCTTCCACAATGCGAT
ACCTTTCGTAGGGTTTGGCTTTTTGGATAACGCAATTATGATTGTTGCAGGAACCCAAATTGAATTGTCT
ATTGGAATTATCTTGGGGATTTCAACAATGGCAGCTGCTGCTTTGGGAAATCTTGTTTCAGATTTAGCTG
GACTGGGCCTTGCAGGTTATGTTGAGGCCTTGGCGTCCAGGCTAGGCCTCTCAATTCCTGATCTTACACC
AAAGCAAGTTGACATGTGGCAAACACGTGTTAGCACACATTTGGGCAAGGCTGTTGGGGTGACGATCGGC
TGCATTCTAGGAATGTTCCCGTTGATTTTCTTTGGAGGAAGTGAAGAGGATGAGAAACTGGAAACAACAA
ATTAA

Translation (234 aa):
MSRLLPLLGSRTARSLRPGPAAAPRLPSWCCCGRGLLALGVPGGPRLLGTHPKKEPMEALNTAQGARDFI
YSLHSTERSCLLKELHRFESIAIAQEKLEALPPTPGQLRYVFFHNAIPFVGFGFLDNAIMIVAGTQIELS
IGIILGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQVDMWQTRVSTHLGKAVGVTIG
CILGMFPLIFFGGSEEDEKLETTN


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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