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Report for CCDS27380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27380.1 Public Mus musculus 15 C1qtnf3 23 108 98 CCDS HistoryNCBI Gene:81799Re-query CCDS DB by CCDS ID:27380.1Re-query CCDS DB by GeneID:81799See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022853.14 ENSMUSP00000022853.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022853.14Link to Ensembl Protein Viewer:ENSMUSP00000022853.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022853Re-query CCDS DB by Protein ID:ENSMUSP00000022853
Original member Current member NCBI NM_030888.4 NP_112150.1 Accepted alive Link to Nucleotide Sequence:NM_030888.4Link to Protein Sequence:NP_112150.1Re-query CCDS DB by Nucleotide ID:NM_030888Re-query CCDS DB by Protein ID:NP_112150Link to BLAST:NP_112150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112150.1 246 Q9ES30 246 100% 0 0

Chromosomal Locations for CCDS 27380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 10952454 10952537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10957957 10958068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10960628 10960782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10971981 10972110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10975591 10975690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10978516 10978675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGCTCGGGAGGCAGCGCATCTGGTGGCACCTGCTGCCTTTGCTTTTCCTCCCATTTTGCCTGTGTCAAG
ATGAATACATGGAGTCTCCACAAGCTGGAGGACTGCCCCCAGACTGCAGCAAGTGTTGCCATGGAGATTA
TGGATTTCGTGGTTACCAAGGGCCCCCTGGACCTCCAGGTCCTCCTGGCATTCCAGGAAACCATGGAAAC
AATGGGAACAATGGAGCTACTGGCCATGAAGGGGCCAAAGGTGAGAAAGGAGACAAAGGCGACCTAGGCC
CTCGAGGAGAACGGGGGCAGCATGGCCCCAAAGGAGAGAAAGGCTACCCAGGGGTGCCACCAGAACTGCA
GATTGCATTCATGGCTTCTCTAGCAACTCACTTCAGCAATCAGAACAGTGGCATTATCTTCAGCAGTGTT
GAGACCAACATTGGAAACTTCTTCGATGTCATGACTGGGAGATTTGGGGCCCCCGTATCAGGTGTGTATT
TCTTCACCTTCAGCATGATGAAGCATGAGGACGTAGAGGAAGTGTATGTGTACCTTATGCACAACGGCAA
CACAGTCTTCAGCATGTACAGCTATGAAACAAAGGGAAAATCAGATACATCCAGCAACCATGCAGTGCTG
AAGTTGGCCAAAGGAGATGAAGTCTGGCTAAGAATGGGCAACGGTGCCCTCCACGGGGACCACCAGCGCT
TCTCCACCTTCGCAGGCTTTCTGCTCTTTGAAACTAAGTGA

Translation (246 aa):
MLGRQRIWWHLLPLLFLPFCLCQDEYMESPQAGGLPPDCSKCCHGDYGFRGYQGPPGPPGPPGIPGNHGN
NGNNGATGHEGAKGEKGDKGDLGPRGERGQHGPKGEKGYPGVPPELQIAFMASLATHFSNQNSGIIFSSV
ETNIGNFFDVMTGRFGAPVSGVYFFTFSMMKHEDVEEVYVYLMHNGNTVFSMYSYETKGKSDTSSNHAVL
KLAKGDEVWLRMGNGALHGDHQRFSTFAGFLLFETK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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