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Report for CCDS27237.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27237.1 Public Mus musculus 14 Nkx3-1 23 108 98 CCDS HistoryNCBI Gene:18095Re-query CCDS DB by CCDS ID:27237.1Re-query CCDS DB by GeneID:18095See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27237.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022646.8 ENSMUSP00000022646.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022646.8Link to Ensembl Protein Viewer:ENSMUSP00000022646.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022646Re-query CCDS DB by Protein ID:ENSMUSP00000022646
Original member Current member NCBI NM_010921.3 NP_035051.1 Accepted alive Link to Nucleotide Sequence:NM_010921.3Link to Protein Sequence:NP_035051.1Re-query CCDS DB by Nucleotide ID:NM_010921Re-query CCDS DB by Protein ID:NP_035051Link to BLAST:NP_035051.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035051.1 237 P97436 237 100% 0 0

Chromosomal Locations for CCDS 27237.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 69190705 69190993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69191824 69192248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGCTTAGGGTAGCGGAGCCCCGAGAGCCACGGGTGGAGGCGGGTGGCCGCAGTCCTTGGGCAGCGCCAC
CCACGCAGTCCAAGCGGCTCACCTCCTTCCTCATCCAGGACATCCTGCGGGACCGCGCGGAGCGGCACGG
GGGACACTCAGGCAATCCGCAGCACTCGCCGGACCCTAGGAGGGACTCCGCTCCAGAGCCCGACAAAGCA
GGGGGTCGCGGCGTGGCTCCGGAGGACCCACCAAGTATCCGGCATAGCCCCGCGGAGACACCGACTGAAC
CCGAGTCTGATGCACATTTTGAGACTTATCTTTTGGACTGTGAACATAATCCAGGGGACTTAGCAAGTGC
CCCCCAGGTCACCAAGCAGCCACAGAAGCGCTCCCGGGCCGCCTTCTCTCACACTCAGGTGATTGAGTTG
GAGAGGAAGTTCAGCCATCAGAAGTACCTGTCTGCCCCTGAGAGGGCTCACCTGGCCAAGAACCTCAAAC
TCACCGAAACCCAAGTCAAAATATGGTTCCAGAACAGACGCTATAAGACCAAGCGAAAGCAGCTGTCGGA
AGACCTGGGAGTCTTGGAGAAGAACTCACCATTGTCTTTGCCAGCCCTGAAAGATGACAGCCTGCCCAGT
ACCTCCTTGGTCTCCGTGTATACTAGCTATCCCTACTACCCCTACCTGTACTGTCTGGGCAGCTGGCATC
CATCTTTCTGGTAG

Translation (237 aa):
MLRVAEPREPRVEAGGRSPWAAPPTQSKRLTSFLIQDILRDRAERHGGHSGNPQHSPDPRRDSAPEPDKA
GGRGVAPEDPPSIRHSPAETPTEPESDAHFETYLLDCEHNPGDLASAPQVTKQPQKRSRAAFSHTQVIEL
ERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSEDLGVLEKNSPLSLPALKDDSLPS
TSLVSVYTSYPYYPYLYCLGSWHPSFW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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