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Report for CCDS27090.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27090.2 Public Mus musculus 14 Rem2 23 108 98 CCDS HistoryNCBI Gene:140743Re-query CCDS DB by CCDS ID:27090.2Re-query CCDS DB by GeneID:140743See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 27090.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27090.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164766.7 ENSMUSP00000127199.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164766.7Link to Ensembl Protein Viewer:ENSMUSP00000127199.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164766Re-query CCDS DB by Protein ID:ENSMUSP00000127199
Original member NCBI NM_080726.3 NP_542764.2 Updated not alive Link to Nucleotide Sequence:NM_080726.3Link to Protein Sequence:NP_542764.2Re-query CCDS DB by Nucleotide ID:NM_080726Re-query CCDS DB by Protein ID:NP_542764
Current member NCBI NM_080726.4 NP_542764.2 Accepted alive Link to Nucleotide Sequence:NM_080726.4Link to Protein Sequence:NP_542764.2Re-query CCDS DB by Nucleotide ID:NM_080726Re-query CCDS DB by Protein ID:NP_542764Link to BLAST:NP_542764.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542764.2 341 Q8VEL9-1 341 99.7067% 0 1

Chromosomal Locations for CCDS 27090.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54476272 54476374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54477471 54477815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54478028 54478101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54478954 54479161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54479450 54479745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGCACACGGACCTTGACACCGACATGGACATGGACACAGAAACCGTAGCACTTTGTTCTTCCAGCAGCC
GCCAGGCCTCCCCACTGGGGACACCCACACCAGAAGCAGATACTACACTTCTGAAACAGAAGCCAGAGAA
ACTGTTAGCAGAGTTGGACCTGAGCGGGCCTCCTCCTGCTCCTGGGGTCCCCAGACGAAGAGGAAGCATG
CCCGTGCCCTACAAACACCAGCTGCGGCGGGCCCAAGCTGTAGATGAACTTGACTGGCCACCCCAGGCCT
CCCCCTCTGGCTCCTCTGACTCCTTGGGCTCAGGGGAGGCAGCCCTTACCCAAAAAGATGGCGTCTTTAA
GGTCATGCTCGTGGGGGAGAGTGGCGTGGGCAAGAGCACTCTAGCGGGCACTTTTGGAGGTCTCCAGGGA
GACCATGCTCACGAGATGGAGAACTCAGAGGACACCTATGAGAGACGGATCATGGTGGACAAAGAAGAAG
TGACTTTAATTGTTTATGACATCTGGGAACAGGGAGATGCAGGAGGATGGCTGCAGGATCACTGCCTTCA
GACGGGGGATGCCTTTCTCATCGTCTTCTCAGTGACAGATCGACGAAGCTTCTCTAAAGTTCCAGAAACC
CTTCTTCGGCTCCGGGCTGGGAGGCCCCACCATGACCTACCTGTCATCCTTGTTGGAAATAAGAGTGACC
TGGCCCGCTCCCGGGAGGTATCACTGGAGGAGGGTCGCCATCTGGCTGGGACGCTGAGCTGCAAGCACAT
CGAGACGTCGGCCGCTCTCCACCACAACACTCGTGAGCTCTTCGAGGGTGCTGTGCGTCAGATCAGGCTG
CGGCGGGGCCGGGGTCATGCCGGGGGCCAGCGACCCGAACCTAGCAGCCCGGACGGCCCCGCGCCGCCTA
CGCGCCGTGAGAGCCTCACCAAGAAAGCTAAGCGCTTCCTCGCCAACCTGGTGCCGCGCAACGCTAAGTT
CTTCAAGCAACGCTCCAGGTCATGTCACGACCTCTCTGTGCTCTGA

Translation (341 aa):
MHTDLDTDMDMDTETVALCSSSSRQASPLGTPTPEADTTLLKQKPEKLLAELDLSGPPPAPGVPRRRGSM
PVPYKHQLRRAQAVDELDWPPQASPSGSSDSLGSGEAALTQKDGVFKVMLVGESGVGKSTLAGTFGGLQG
DHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET
LLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL
RRGRGHAGGQRPEPSSPDGPAPPTRRESLTKKAKRFLANLVPRNAKFFKQRSRSCHDLSVL


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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