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Report for CCDS27008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27008.1 Public Mus musculus 14 Or4n4 23 108 98 CCDS HistoryNCBI Gene:258659Re-query CCDS DB by CCDS ID:27008.1Re-query CCDS DB by GeneID:258659See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071208.2 ENSMUSP00000071195.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071208.2Link to Ensembl Protein Viewer:ENSMUSP00000071195.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000071208Re-query CCDS DB by Protein ID:ENSMUSP00000071195
Original member Current member EBI ENSMUST00000213701.1 ENSMUSP00000148984.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213701.1Link to Ensembl Protein Viewer:ENSMUSP00000148984.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213701Re-query CCDS DB by Protein ID:ENSMUSP00000148984
Original member Current member NCBI NM_146665.2 NP_666876.1 Accepted alive Link to Nucleotide Sequence:NM_146665.2Link to Protein Sequence:NP_666876.1Re-query CCDS DB by Nucleotide ID:NM_146665Re-query CCDS DB by Protein ID:NP_666876Link to BLAST:NP_666876.1

Chromosomal Locations for CCDS 27008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50281325 50282251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGAGACAGAAAACAGGACAGTTGTCACAGAATTCATCCTCATAGGACTGACCCAGTCACATGACATTC
AGCGCTTGGTCTTTGTTCTGAGCTTAATTTTCTACATCATCATCTTGCCTGGAAATATCCTGATCATCCT
GACCATCAGATCAGACCCTGGACTTACTGCCCCTCTTTATTTCTTCTTGGGAAATTTGGCCTTCCTGGAT
GCCTCCTACTCCTTCATTGTGGCTCCCAGGATGTTGGTAGACTTCTTCTCTGAGAAGAAGATAATCTCCT
ACAAAGCCTGCATCACTCAGCTATTTTTTTTGCACTTCCTTGGAGGGGGTGAAGGGTTACTTCTGGTTGT
GATGGCCTTTGACCGCTACATTGCCATCTGCAGGCCTTTACATTATTCTACTGTTATGAGCCCTAGAGCC
TGCTATGTGATGTTGTTGGCTCTCTGGCTTGGAGGATTTATTCACTCCATTATTCAGGTTGTCCTCATCC
TCCGTTTGCCTTTCTGTGGTCCAAATCATCTAGATAATTTCTTCTGTGATGTCCCACAGGTCATCAAGCT
AGCCTGTACAGACACCTTTGCAGTTGAGCTCCTTATGATCTTCAATAGTGGCCTGCTTACCCTCCTTTGT
TTTCTTGGTCTTCTGACTTCCTATGCAGTTATTTTATGCCATGTTCACAGGTCAGCTTCTGAAGGAAAAA
ACAAAGCTATATCTACATGTACCACTCATGTTATCATTATATTTATTATGTTTGGACCTGCAATTTTTAT
TTATACACGTCCATTCACTGCCCTATCAGCTGACAAAGTCGTTTCCTTCTTCCATACAGTAATATTTCCA
CTGATGAATCCTGTGATTTATACCCTTCGGAATCAGGAAGTAAAAACTTCCATGAAAAAGTTAATCATCC
GGCATATTATTTGTTAA

Translation (308 aa):
METENRTVVTEFILIGLTQSHDIQRLVFVLSLIFYIIILPGNILIILTIRSDPGLTAPLYFFLGNLAFLD
ASYSFIVAPRMLVDFFSEKKIISYKACITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHYSTVMSPRA
CYVMLLALWLGGFIHSIIQVVLILRLPFCGPNHLDNFFCDVPQVIKLACTDTFAVELLMIFNSGLLTLLC
FLGLLTSYAVILCHVHRSASEGKNKAISTCTTHVIIIFIMFGPAIFIYTRPFTALSADKVVSFFHTVIFP
LMNPVIYTLRNQEVKTSMKKLIIRHIIC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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