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Report for CCDS26885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26885.1 Public Mus musculus 14 Il17rd 23 108 98 CCDS HistoryNCBI Gene:171463Re-query CCDS DB by CCDS ID:26885.1Re-query CCDS DB by GeneID:171463See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035336.4 ENSMUSP00000036076.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035336.4Link to Ensembl Protein Viewer:ENSMUSP00000036076.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000035336Re-query CCDS DB by Protein ID:ENSMUSP00000036076
Original member NCBI NM_134437.3 NP_602319.1 Updated not alive Link to Nucleotide Sequence:NM_134437.3Link to Protein Sequence:NP_602319.1Re-query CCDS DB by Nucleotide ID:NM_134437Re-query CCDS DB by Protein ID:NP_602319
Current member NCBI NM_134437.4 NP_602319.1 Accepted alive Link to Nucleotide Sequence:NM_134437.4Link to Protein Sequence:NP_602319.1Re-query CCDS DB by Nucleotide ID:NM_134437Re-query CCDS DB by Protein ID:NP_602319Link to BLAST:NP_602319.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_602319.1 738 Q8JZL1-1 738 100% 0 0

Chromosomal Locations for CCDS 26885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 27039104 27039229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27076351 27076408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27082655 27082780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27087399 27087517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27088006 27088126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27091789 27091833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27091929 27092080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27093397 27093462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27094178 27094232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27094776 27094886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27095903 27096087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27099483 27100425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 27101277 27101386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2217 nt):
ATGGCCCCGTGGCTGCAGCTCTGCTCCTTCTTCTTCACTGTCAACGCCTGTCTCAACGGCTCGCAGCTGG
CAGTGGCCGCGGGCGGCTCCGGCCGCGCGAGGGGCGCGGACACCTGTGGCTGGAGGGGAGTGGGGCCGGC
CAGCAGGAACAGCGGACTGCACAACATCACCTTCAGATACGACAACTGTACCACCTACTTGAATCCCGGC
GGGAAGCATGCGATTGCTGATGCTCAGAACATCACCATCAGCCAGTACGCTTGCCACGACCAGGTGGCAG
TCACCATTCTTTGGTCCCCAGGGGCCCTTGGCATTGAATTCCTAAAAGGATTCCGAGTCATCCTGGAGGA
GCTGAAGTCGGAGGGCAGACAGTGCCAACAGCTGATTCTAAAGGACCCCAAACAGCTCAACAGCAGCTTC
AGAAGGACTGGAATGGAATCTCAGCCTTTCCTGAATATGAAATTTGAGACGGATTACTTTGTAAAGATTG
TCCCTTTCCCTTCCATTAAAAATGAAAGCAATTACCATCCCTTCTTCTTCAGAACACGGGCCTGTGACCT
GTTGTTACAACCTGACAACTTGGCCTGTAAGCCTTTCTGGAAGCCTCGAAACCTGAATATCAGCCAGCAT
GGTTCTGACATGCACGTGTCCTTCGACCATGCCCCGCAGAACTTCGGCTTCCGTGGCTTCCATGTTCTCT
ATAAGCTCAAGCACGAAGGCCCCTTCAGGCGGAGGACTTGCAGGCAGGACCAGAATACAGAGACAACCAG
CTGCCTCCTCCAAAACGTTTCTCCAGGGGACTATATCATTGAGCTGGTGGATGACAGCAACACCACCAGG
AAAGCTGCTCAGTATGTGGTGAAGTCAGTGCAGTCTCCCTGGGCTGGACCCATCAGAGCTGTGGCCATCA
CTGTGCCTCTGGTTGTCATATCTGCGTTCGCAACCCTGTTCACTGTGATGTGCAGAAAGAAGCAACAAGA
AAATATATATTCACATTTAGATGAAGAAAGCCCGGAGTCGTCCACATACGCTGCGGCTCTCCCCAGAGAC
AGGCTCCGGCCTCAGCCCAAGGTCTTCCTCTGCTACTCCAATAAAGATGGCCAGAATCACATGAACGTGG
TCCAGTGTTTCGCCTATTTCCTGCAAGATTTCTGTGGCTGTGAGGTGGCTCTGGACTTGTGGGAAGATTT
CAGCCTCTGCAGAGAGGGGCAGAGAGAATGGGCCATTCAGAAGATCCACGAGTCCCAGTTCATCATTGTC
GTGTGCTCCAAAGGCATGAAGTACTTTGTAGATAAGAAGAACTTCAGACACAAAGGAGGCAGCCGCGGCG
AGGCGCAAGGCGAGTTCTTCCTGGTGGCCGTGGCAGCCATTGCTGAGAAGCTCCGTCAGGCCAAGCAGAG
CTCATCTGCCGCACTGCGCAAGTTCATCGCCGTCTACTTCGATTATTCCTGTGAAGGGGATGTACCCTGC
AGCCTGGACCTGAGCACCAAGTACAAGCTCATGGACCACCTTCCTGAGCTCTGTGCCCATCTGCACTCAG
GAGAGCAGGAGGTGCTGGGTCAGCACCCAGGCCACAGCAGCAGAAGGAACTACTTCCGGAGCAAATCGGG
CCGCTCCCTGTATGTTGCCATTTGCAACATGCACCAGTTTATTGATGAGGAGCCTGACTGGTTTGAGAAG
CAGTTTATACCCTTCCAACATCCCCCTGTGCGTTACCAGGAGCCAGTCCTGGAGAAATTTGACTCAGGCT
TGGTTTTAAATGATGTCATAAGCAAACCAGGGCCAGAGAGTGACTTCTGTCGGAAAGTCGAGGCTTGTGT
ACTTGGGGCCGCTGGGCCAGCCGACTCTTATTCATACCTGGAGAGTCAGCATGTAGGCCTGGACCAAGAC
ACTGAGGCCCAGCCCTCCTGTGATAGTGCCCCTGCCTTGCAGCCCCTGTTACACGCAGTGAAAGCTGGCA
GTCCCTCAGAGATGCCACGGGACTCAGGCATATATGATTCTTCTGTACCCTCATCAGAGCTCTCTCTGCC
TCTGATGGAGGGACTCTCTCCGGATCAGATAGAAACATCTTCTCTGACCGAGAGTGTATCTTCCTCCTCT
GGCCTAGGTGAGGAGGACCCCCCTACCCTCCCTTCCAAGCTCCTTGCCTCTGGGGTGTCCAGAGAACATG
GTTGCCACAGCCACACTGACGAACTGCAAGCGCTTGCTCCTTTGTAA

Translation (738 aa):
MAPWLQLCSFFFTVNACLNGSQLAVAAGGSGRARGADTCGWRGVGPASRNSGLHNITFRYDNCTTYLNPG
GKHAIADAQNITISQYACHDQVAVTILWSPGALGIEFLKGFRVILEELKSEGRQCQQLILKDPKQLNSSF
RRTGMESQPFLNMKFETDYFVKIVPFPSIKNESNYHPFFFRTRACDLLLQPDNLACKPFWKPRNLNISQH
GSDMHVSFDHAPQNFGFRGFHVLYKLKHEGPFRRRTCRQDQNTETTSCLLQNVSPGDYIIELVDDSNTTR
KAAQYVVKSVQSPWAGPIRAVAITVPLVVISAFATLFTVMCRKKQQENIYSHLDEESPESSTYAAALPRD
RLRPQPKVFLCYSNKDGQNHMNVVQCFAYFLQDFCGCEVALDLWEDFSLCREGQREWAIQKIHESQFIIV
VCSKGMKYFVDKKNFRHKGGSRGEAQGEFFLVAVAAIAEKLRQAKQSSSAALRKFIAVYFDYSCEGDVPC
SLDLSTKYKLMDHLPELCAHLHSGEQEVLGQHPGHSSRRNYFRSKSGRSLYVAICNMHQFIDEEPDWFEK
QFIPFQHPPVRYQEPVLEKFDSGLVLNDVISKPGPESDFCRKVEACVLGAAGPADSYSYLESQHVGLDQD
TEAQPSCDSAPALQPLLHAVKAGSPSEMPRDSGIYDSSVPSSELSLPLMEGLSPDQIETSSLTESVSSSS
GLGEEDPPTLPSKLLASGVSREHGCHSHTDELQALAPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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