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Report for CCDS26697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26697.1 Public Mus musculus 13 Aggf1 23 108 98 CCDS HistoryNCBI Gene:66549Re-query CCDS DB by CCDS ID:26697.1Re-query CCDS DB by GeneID:66549See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26697.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022189.8 ENSMUSP00000022189.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022189.8Link to Ensembl Protein Viewer:ENSMUSP00000022189.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022189Re-query CCDS DB by Protein ID:ENSMUSP00000022189
Original member Current member NCBI NM_025630.3 NP_079906.2 Accepted alive Link to Nucleotide Sequence:NM_025630.3Link to Protein Sequence:NP_079906.2Re-query CCDS DB by Nucleotide ID:NM_025630Re-query CCDS DB by Protein ID:NP_079906Link to BLAST:NP_079906.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079906.2 711 Q7TN31 711 100% 0 0

Chromosomal Locations for CCDS 26697.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 95351502 95351702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95352747 95352846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95353950 95354077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95356393 95356475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95357197 95357362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95358710 95358811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95362469 95362520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95362837 95362948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95364681 95365002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95368380 95368568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95369397 95369558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95370757 95370959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95371541 95371643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95374846 95375058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGGCCTCCGAGGCGCCCTCGCCGCCTTCGCCTTCTCCGCCGCCGCCCGCCTCTCCGGAGCCGGAGCTGG
CGCAGCTCAGGCGGAAGGTGGAGAAGTTGGAGCGCGAGCTGCGGAGCTGCCGGAGGCAGGTGCGGGAGGT
GGAGAAGCTGCTGCAGCACACGGAGCGACTCTACCGCAACGCCGAGAGCGACAACCAGGAGCTCCGCACG
CAGGTAGAAGAACTTAGTAAAATACTCCATTGTGGGAAAAATGAAGATAATCCGAAGTCTGATGTAGAAG
TACAGACAGAGAGCCAAGCTCCTTGGGCGATTTCAGATTATTACTATCAGACATGTTATAATGACGACAG
TCTTCCCAGTAAAGAGACGGAGCTGTGTGTACAGCAGAGTCAGTGTGCTCAGGCTTCCGCTCTTGATCCT
CAGGACGAGTCACACATAGACAGCGGGAGTTATGCTGGTGCTGATGCCACAGAAGGTGTTAGCCATAGAC
AGGAGGACGCCGTCACCTCTGACTCACAGGAGAGTGTGTCCGCGCTAGCAGAAGGCCCAGCACTCGAAGG
GTCCTCGCTTGCTGAGAGCTTGAGAGCTGCAGCGGAGGCTGCTGTGTCGCAGACCGGCTTCACCTACGAC
GAGAGCACGGGCTTATATTTTGACCACAGCACTGGTTTCTATTATGATTCTGAAAACCAGCTGTATTATG
ACCCTTCCACGGGGATTTATTACTACTGCGATGTGGAGAGTGGTCGGTACCAGTTTCACTCTCGCGTAGA
CCTGCAGCCTTACCAGACCTCTAGCACAAAACCAAACAGAGAAAGAAGACTGAAGAAGAGAAGAAAGGAG
CCAGGTTTTTATACAGCAAATGAAGAAAAGGATTTGAGCTCAGAAGATCAGAAAGTCTGCAGTGTAGAAT
ATATAAACTGCAGTGAGGATGAACATTCTGGAAATGTGAAAAAGAAGGCCAGAACAGACACTTCTCACAA
AAGCAGTCCCTTACAGCTCACGGTGGCAGTTAGTGGAGACACTGTGGAGTCTCCTGGAGATGATAACTCA
GCGTCATCTAAGGATGAGAGAATCGGAGAGAGTGAGAGCGAGCCGGAAGAAGGTGAGATCACAGACTCTC
AGAGTGAGAAGAGCTATGATGGAGACAGTAGCAGTGGGGACAGGGAGACCTCAGAAGAATCCGACGATGA
AGATGAGGAAAGAATTTGGCCGCCCTGTATTCGCGTGATTGTCATTAGGTCTCCAGTGTTGCAGATGGGC
TCGCTGTTCATCATCACCGCTGTGAGCCCAGCCACCATTGGGAGAGAGAAGGACATGGAGCATACTGTGA
GAATCCCTGAAGTCGCTGTTAGTAAGTTCCACGCAGAAGTTTACTTCGACCATGACTTGCAAAGCTACGT
TCTTGTGGATCAGGGCAGCCAGAATGGTACCATTGTCAACGGGAAACAGATTCTTCAGCCAAAAACTAAA
TGTGATCCTTACGTCCTCGAACACGGCGACGAAGTGAAAATTGGGGAGACTGTGCTGTCTTTTCACATTC
ACCCTGGCAGTGAGACGTGCGATGGCTGTGAGCCGGGGCAGGTCAGAGCTCACCTCCGCCTCGATAGAAA
GGACGAGCCTCTGGTCGGTCCAGCACTAAGTAAGGAGGAAAAAGAGTTGGAAAGAAGAAAAGCACTCAAG
AAAATACGAGTAAAGTATGGCTTGCAGAATACAGATTATGAAGCTGAAAAAGCGTTGAAGAATCCTAAGT
ATAAAGACAGAGCTGGAAAACGCAGGGAGCAGGTGGGAAGCGAAGGGACTTTCCAAAGAGATGACGCCCC
TGCGTCTGTTCACTCTGAAATTACAGATAGCAACAAAGGCCGAAAGATGTTGGAGAAGATGGGGTGGAAA
CGGGGAGAAGGCCTGGGAAAGGACGGTGGAGGGATGAAAACGCCGATCCAGCTTCAGCTTCGACGGACAC
ATGCTGGCTTGGGGACAGGGAAGCTGTCCTCGATTGATGACGTTCACCTCATCCAGAATAAGAGCAAAAA
ACACTGGGACAAAGCCCGGGAGCGGTTTGCGGAAACTTTCACAGAAAACAAACCTCGGAAAGAGACCCCA
GGGGCAGTGCCGTGGGTGACAGGGACTGCAGAGTAA

Translation (711 aa):
MASEAPSPPSPSPPPPASPEPELAQLRRKVEKLERELRSCRRQVREVEKLLQHTERLYRNAESDNQELRT
QVEELSKILHCGKNEDNPKSDVEVQTESQAPWAISDYYYQTCYNDDSLPSKETELCVQQSQCAQASALDP
QDESHIDSGSYAGADATEGVSHRQEDAVTSDSQESVSALAEGPALEGSSLAESLRAAAEAAVSQTGFTYD
ESTGLYFDHSTGFYYDSENQLYYDPSTGIYYYCDVESGRYQFHSRVDLQPYQTSSTKPNRERRLKKRRKE
PGFYTANEEKDLSSEDQKVCSVEYINCSEDEHSGNVKKKARTDTSHKSSPLQLTVAVSGDTVESPGDDNS
ASSKDERIGESESEPEEGEITDSQSEKSYDGDSSSGDRETSEESDDEDEERIWPPCIRVIVIRSPVLQMG
SLFIITAVSPATIGREKDMEHTVRIPEVAVSKFHAEVYFDHDLQSYVLVDQGSQNGTIVNGKQILQPKTK
CDPYVLEHGDEVKIGETVLSFHIHPGSETCDGCEPGQVRAHLRLDRKDEPLVGPALSKEEKELERRKALK
KIRVKYGLQNTDYEAEKALKNPKYKDRAGKRREQVGSEGTFQRDDAPASVHSEITDSNKGRKMLEKMGWK
RGEGLGKDGGGMKTPIQLQLRRTHAGLGTGKLSSIDDVHLIQNKSKKHWDKARERFAETFTENKPRKETP
GAVPWVTGTAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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