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Report for CCDS26667.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26667.2 Public Mus musculus 13 Rasa1 23 108 98 CCDS HistoryNCBI Gene:218397Re-query CCDS DB by CCDS ID:26667.2Re-query CCDS DB by GeneID:218397See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 26667.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26667.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109552.2 ENSMUSP00000105179.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109552.2Link to Ensembl Protein Viewer:ENSMUSP00000105179.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109552Re-query CCDS DB by Protein ID:ENSMUSP00000105179
Original member NCBI NM_145452.3 NP_663427.2 Updated not alive Link to Nucleotide Sequence:NM_145452.3Link to Protein Sequence:NP_663427.2Re-query CCDS DB by Nucleotide ID:NM_145452Re-query CCDS DB by Protein ID:NP_663427
Current member NCBI NM_145452.4 NP_663427.2 Accepted alive Link to Nucleotide Sequence:NM_145452.4Link to Protein Sequence:NP_663427.2Re-query CCDS DB by Nucleotide ID:NM_145452Re-query CCDS DB by Protein ID:NP_663427Link to BLAST:NP_663427.2

Chromosomal Locations for CCDS 26667.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 85216104 85216187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85216877 85217011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85218182 85218259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85219406 85219494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85221471 85221538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85223458 85223544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85224203 85224318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85225482 85225624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85226534 85226693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85226952 85227124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85228231 85228307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85228608 85228765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85229605 85229682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85230388 85230475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85233589 85233745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85234360 85234480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85238139 85238217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85244188 85244338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85246591 85246643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85250432 85250463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85252426 85252543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85255384 85255454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85256339 85256474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85258318 85258470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 85288396 85288907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3117 nt):
ATGATGGCGGCCGAGGCGGGCAGTGAGGAAGGCGGCCCTGCGACGGCGGGCCCCGGCGGCGGCGCGGCCA
CGGGCTCCAGCGCCTACTCGGCAGCGTGCCGGGTCAAGTTACCCGCGGCCCTGCCGGTGGCAGCCGCCCC
GTGTCCCGGGCTGGCGGACGCCGACTTGGTTGCGGCCCTCGGTGGCGGAGCCGCGTCGGGGTCCGGGTTC
CTGGGGACCGGGCCGGTGGCCGGTGTCTTGGGGGGCGCCGCGCTGACCGGCAGTGCTGCTGCTGGCGTGG
CTGGTGCTGCGGCCGCCGGACCTGCGGGAGACGTCGCTTTCACCAAGGGGACTCTGTCTTTGCCTGCTGA
GACGCTCGGGCCGGGCGGCGGATTCCCTCCTCTGCCGCCGCCTCCTCAGCTGCCCCCTTTGGGCTCCGGT
TTGGGGACCGTGGATGAAGGTGACTCCCTGGATGGACCAGAATACGAAGAGGAAGAGGTGGCCATACCGC
TGACCGCACCTCCCACTAACCAGTGGTATCATGGAAAACTTGATAGAACTATAGCAGAAGAACGCCTCAG
GCAGGCAGGGAAATCTGGAAGCTATCTTATAAGAGAGAGTGATCGGAGGCCGGGGTCCTTTGTACTTTCA
TTCCTTAGTCAGACAAATGTTGTCAATCATTTTAGGATTATTGCTATGTGTGGTGATTACTACATTGGTG
GAAGGCGTTTTTCTTCACTCTCAGACCTAATAGGTTATTACAGTCACGTTTCTTGTTTACTTAAAGGAGA
AAAATTACTCTATCCAGTTGCACCACCAGAGCCAGTAGAAGATAGAAGGCGTGTACGAGCCATTCTGCCC
TACACAAAAGTACCAGACACTGATGAAATAAGTTTTTTAAAAGGAGATATGTTCATTGTTCACAATGAGT
TAGAAGATGGATGGATGTGGGTTACCAATCTAAGAACAGATGAGCAAGGCCTTATTGTTGAAGACCTAGT
GGAAGAGGTGGGCCGAGAAGAAGATCCACACGAAGGCAAAATATGGTTCCACGGGAAAATTTCCAAACAA
GAAGCTTATAATTTATTAATGACAGTTGGACAAGTCTGCAGCTTTCTTGTGAGGCCCTCAGATAATACTC
CTGGAGATTATTCTCTGTATTTTCGGACCAATGAAAATATTCAGCGATTTAAAATTTGTCCAACACCTAA
CAACCAGTTTATGATGGGAGGCCGCTATTATAACAGTATCGGGGACATCATAGACCATTATCGGAAAGAA
CAGATTGTTGAAGGCTATTATCTTAAGGAACCTGTACCAATGCAGGATCAAGGGCAAGTACTGAACGACA
CTGTGGATGGGAAGGAGATCTATAACACAATTCGTCGGAAGACAAAGGATGCTTTTTATAAAAATATTGT
TAAAAAAGGTTATCTTCTGAAGAAGGGTAAAGGAAAACGTTGGAAAAATTTATATTTTATCTTAGAAGGC
AGTGATGCTCAACTTATTTATTTTGAAAGTGAAAAACGAGCTACAAAACCAAAAGGGCTAATAGACCTTA
GTGTGTGTTCTGTCTACGTTGTCCATGACAGTCTCTTCGGCAGGCCAAACTGTTTTCAGATAGTAGTTCA
GCACTTTAGTGAAGAACATTACATCTTTTACTTTGCAGGAGAAACTCCAGAACAAGCAGAGGATTGGATG
AAAGGTCTGCAAGCATTTTGCAGTTTACGGAAAAGTAGCCCAGGGACATCTAATAAACGCCTTCGTCAGG
TCAGCAGCCTTGTTTTACATATTGAAGAAGCCCATAAACTACCAGTAAAACACTTTACTAATCCATATTG
TAACATCTACTTGAATAGCGTCCAAGTAGCAAAAACTCATGCAAGGGAGGGGCAAAACCCAGTATGGTCA
GAGGAGTTTGTCTTTGATGATCTTCCTCCTGACATCAATAGATTTGAAATCACACTTAGTAATAAAACAA
AGAAAAGCAAAGATCCAGATATCTTATTTATGCGTTGCCAGTTGAGCAGGTTACAGAAAGGACATGCAAC
AGATGAATGGTTTCTACTAAGTTCCCATATACCACTAAAAGGTATTGAACCAGGATCTTTGCGTGTTCGA
GCACGATACTCCATGGAAAAAATCATGCCAGAAGAAGAGTACAGTGAATTTAAAGAGCTTATACTGCAAA
AGGAACTTCATGTCGTCTATGCTTTATCACATGTATGTGGACAAGACCGAACACTACTGGCCAGCATCCT
ACTAAAGATATTTCTTCATGAAAAGCTTGAATCATTGTTGTTATGCACACTAAATGACAGAGAGATAAGT
ATGGAAGATGAAGCCACTACCCTATTTCGAGCTACAACACTTGCAAGTACCTTGATGGAGCAGTATATGA
AAGCTACTGCCACACAGTTTGTTCATCATGCTTTGAAAGACTCCATTTTAAAGATTATGGAAAGCAAGCA
ATCATGTGAGTTAAGTCCGTCAAAGTTAGAAAAAAATGAAGATGTGAACACTAATTTAGCACACCTATTG
AGCATACTTTCAGAGCTTGTGGAGAAAATATTCATGGCTTCAGAAATACTTCCACCGACACTGAGATATA
TCTATGGGTGTTTACAGAAATCAGTTCAGCATAAGTGGCCTACAAATAACACCATGAGAACAAGAGTCGT
TAGTGGTTTTGTTTTTCTTCGCCTTATCTGCCCTGCTATCCTGAATCCACGGATGTTTAATATCATCTCA
GATTCCCCATCTCCTATTGCTGCAAGAACACTGACATTAGTGGCTAAATCTGTGCAGAATTTAGCAAATC
TTGTGGAATTTGGAGCTAAGGAGCCTTATATGGAAGGTGTCAATCCATTTATAAAAAGTAATAAACATCG
CATGATCATGTTTTTAGATGAACTTGGGAATGTACCTGAACTTCCGGACACTACAGAGCATTCTAGAACT
GACCTGTCTCGTGACTTAGCAGCATTGCATGAGATTTGTGTAGCTCATTCAGATGAACTGAGAACACTCA
GCAATGAGCGTGGTGTACAGCAGCACGTACTGAAAAAGCTTCTGGCGATAACAGAACTGCTTCAACAAAA
ACAAAACCAGTATACAAAAACCAATGACATCAGGTAG

Translation (1038 aa):
MMAAEAGSEEGGPATAGPGGGAATGSSAYSAACRVKLPAALPVAAAPCPGLADADLVAALGGGAASGSGF
LGTGPVAGVLGGAALTGSAAAGVAGAAAAGPAGDVAFTKGTLSLPAETLGPGGGFPPLPPPPQLPPLGSG
LGTVDEGDSLDGPEYEEEEVAIPLTAPPTNQWYHGKLDRTIAEERLRQAGKSGSYLIRESDRRPGSFVLS
FLSQTNVVNHFRIIAMCGDYYIGGRRFSSLSDLIGYYSHVSCLLKGEKLLYPVAPPEPVEDRRRVRAILP
YTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVGREEDPHEGKIWFHGKISKQ
EAYNLLMTVGQVCSFLVRPSDNTPGDYSLYFRTNENIQRFKICPTPNNQFMMGGRYYNSIGDIIDHYRKE
QIVEGYYLKEPVPMQDQGQVLNDTVDGKEIYNTIRRKTKDAFYKNIVKKGYLLKKGKGKRWKNLYFILEG
SDAQLIYFESEKRATKPKGLIDLSVCSVYVVHDSLFGRPNCFQIVVQHFSEEHYIFYFAGETPEQAEDWM
KGLQAFCSLRKSSPGTSNKRLRQVSSLVLHIEEAHKLPVKHFTNPYCNIYLNSVQVAKTHAREGQNPVWS
EEFVFDDLPPDINRFEITLSNKTKKSKDPDILFMRCQLSRLQKGHATDEWFLLSSHIPLKGIEPGSLRVR
ARYSMEKIMPEEEYSEFKELILQKELHVVYALSHVCGQDRTLLASILLKIFLHEKLESLLLCTLNDREIS
MEDEATTLFRATTLASTLMEQYMKATATQFVHHALKDSILKIMESKQSCELSPSKLEKNEDVNTNLAHLL
SILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNNTMRTRVVSGFVFLRLICPAILNPRMFNIIS
DSPSPIAARTLTLVAKSVQNLANLVEFGAKEPYMEGVNPFIKSNKHRMIMFLDELGNVPELPDTTEHSRT
DLSRDLAALHEICVAHSDELRTLSNERGVQQHVLKKLLAITELLQQKQNQYTKTNDIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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