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Report for CCDS26642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26642.1 Public Mus musculus 13 Pdcd6 23 108 98 CCDS HistoryNCBI Gene:18570Re-query CCDS DB by CCDS ID:26642.1Re-query CCDS DB by GeneID:18570See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26642.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022060.6 ENSMUSP00000022060.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022060.6Link to Ensembl Protein Viewer:ENSMUSP00000022060.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022060Re-query CCDS DB by Protein ID:ENSMUSP00000022060
Original member Current member NCBI NM_011051.3 NP_035181.1 Accepted alive Link to Nucleotide Sequence:NM_011051.3Link to Protein Sequence:NP_035181.1Re-query CCDS DB by Nucleotide ID:NM_011051Re-query CCDS DB by Protein ID:NP_035181Link to BLAST:NP_035181.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035181.1 191 P12815-1 191 100% 0 0

Chromosomal Locations for CCDS 26642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 74303950 74304048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74305541 74305650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74309684 74309842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74311668 74311712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74316330 74316391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74317107 74317207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGCTGCCTACTCCTACCGCCCAGGCCCGGGTGGTGGCCCCGGCCCTGCTGCTGGAGCTGCACTGCCAG
ACCAGAGCTTCCTGTGGAACGTCTTCCAGCGGGTTGATAAAGACAGGAGTGGAGTGATTTCAGACAATGA
GCTTCAGCAAGCATTATCCAATGGTACATGGACTCCATTTAACCCAGTGACTGTGAGGTCAATCATTTCT
ATGTTTGACCGAGAAAACAAGGCTGGTGTGAACTTCAGTGAATTCACGGGTGTGTGGAAGTATATCACAG
ACTGGCAGAATGTCTTCCGGACCTACGACAGGGACAACTCTGGGATGATTGACAAGAACGAGCTCAAACA
AGCACTCTCAGGTTTTGGCTACCGGCTCTCTGATCAGTTCCATGACATCCTCATCCGAAAATTTGACAGG
CAAGGACGGGGCCAGATCGCATTTGATGACTTCATCCAGGGCTGCATCGTCTTGCAGAGGTTGACAGACA
TATTCAGACGCTATGACACGGATCAGGATGGCTGGATTCAGGTGTCTTATGAGCAATATCTCTCCATGGT
CTTCAGCATTGTATAA

Translation (191 aa):
MAAYSYRPGPGGGPGPAAGAALPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIIS
MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDR
QGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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