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Report for CCDS26622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26622.1 Reviewed, update pending Mus musculus 13 Tent4a 23 108 98 CCDS HistoryNCBI Gene:210106Re-query CCDS DB by CCDS ID:26622.1Re-query CCDS DB by GeneID:210106See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26622.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044081.8 ENSMUSP00000040757.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044081.8Link to Ensembl Protein Viewer:ENSMUSP00000040757.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044081Re-query CCDS DB by Protein ID:ENSMUSP00000040757
Original member Current member EBI ENSMUST00000223344.2 ENSMUSP00000152244.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223344.2Link to Ensembl Protein Viewer:ENSMUSP00000152244.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000223344Re-query CCDS DB by Protein ID:ENSMUSP00000152244
Original member NCBI NM_198600.2 NP_941002.2 Updated not alive Link to Nucleotide Sequence:NM_198600.2Link to Protein Sequence:NP_941002.2Re-query CCDS DB by Nucleotide ID:NM_198600Re-query CCDS DB by Protein ID:NP_941002
Current member NCBI NM_198600.3 NP_941002.3 Pending alive Link to Nucleotide Sequence:NM_198600.3Link to Protein Sequence:NP_941002.3Re-query CCDS DB by Nucleotide ID:NM_198600Re-query CCDS DB by Protein ID:NP_941002Link to BLAST:NP_941002.3

Chromosomal Locations for CCDS 26622.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 69499916 69500110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69500473 69500637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69502191 69502349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69502906 69503078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69503635 69503735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69504606 69504732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69506916 69507129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69509563 69509691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69510620 69510727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69512890 69513010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69514965 69515011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 69515780 69515869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGTCCCCTTGTCCTGAAGAAGCAGCCATGAGAAGGGAGGTGGTGAAACGGATCGAAACTGTGGTGAAAG
ACCTCTGGCCCACAGCTGATGTGCAGATATTTGGCAGCTTTAGTACAGGCCTCTATCTTCCAACAAGTGA
CATAGACCTGGTTGTCTTTGGAAAGTGGGAACGCCCTCCATTACAGTTGTTGGAACAAGCCCTCCGGAAG
CACAACGTGGCTGAGCCGTGCTCCATCAAAGTTCTTGACAAAGCTACAGTGCCCATCATAAAGCTCACAG
ATCAGGAGACTGAAGTTAAAGTCGACATCAGCTTTAACATGGAGACTGGCGTGCGGGCGGCAGAGTTCAT
CAAGAATTACATGAAGAAGTACTCGCTACTGCCATACTTGATTTTAGTGCTGAAACAGTTCCTGCTGCAG
AGGGACCTGAATGAGGTCTTCACAGGCGGGATCAGCTCCTACAGCCTCATCCTAATGGCCATCAGCTTTC
TGCAGTTACATCCAAGAATCGATGCCCGGAGAGCTGATGAAAACCTGGGAATGCTTCTTGTAGAATTTTT
TGAACTTTATGGAAGAAATTTTAATTACTTAAAAACTGGTATTAGAATAAAAGAAGGAGGTGCCTATATC
GCCAAAGAAGAGATCATGAAAGCCATGACCAGTGGGTACCGACCATCGATGCTGTGCATTGAGGACCCCT
TACTGCCTGGAAATGATGTTGGACGGAGTTCCTATGGGGCCATGCAGGTGAAGCAGGTGTTTGACTACGC
TTACATTGTGCTCAGCCACGCTGTGTCACCGCTCGCCAGGTCTTACCCCAACAGGGATTCTGAAAGTACT
TTAGGAAGAATCATCAAAGTCACCCAGGAAGTGATCGACTACCGGAGGTGGATCAAAGAAAAGTGGGGTA
GCAGAATCCTCCCGTCTCCAGACCTTGACAACAGGATTAAGATAAAGGAGAGAATTACCACGTGCAATGG
GGAGCAGATGCAGAGCCGGGAGCCCAGCTCCCCTTACACCCAGCGCCTGACTCTGTCCCTGTCCAGTCCC
CAGCTGCTGTCTTCAGGCTCTTCTGCTTCTTCTGTGTCCTCACTTTCTGGAAGTGACATTGACTCCGACA
CACCGCCCTGCACCACACCCAGTGTTTATCAGTTCAGCCTGCAAGCACCCACTACCCTGATGGCCAGCCT
GCCCACAGCCTTGCCAATGCCCAGCAGCAAACCCCAGCCTGCTGCTTCCAGAACGTTGATCATGACAACA
AACAACCAGACCAGGGTTACTATCCCTCCACCAACCCTCGGAGTCGCCCCTGTTCCTTGCAGACAGGCTG
GTGTCGACGGAACCACATCTTTGAAGGCTGTTCACAGTGTAACTTCCCCAGCCATTCCCTCGGCATCCCC
CAACCCACTGTCTAGTCCTCATCTGTATCACAAGCAGCACAATGGCATGAAACTGTCCATGAAAGGCTCC
CACAACCACACTCAGGGTGGCGGCTACAGCTCTGTGGGCAGTGGAGCTGTGAGGCCTCCTGTAGGCAACC
GAGGACATCATCAGTACAACCGCACCGGCTGGAGGAGAAAAAAGCACGCACACACAAGGGACAGCCTGCC
CGTGAGTCTCAGCAGATAA

Translation (542 aa):
MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPPLQLLEQALRK
HNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNMETGVRAAEFIKNYMKKYSLLPYLILVLKQFLLQ
RDLNEVFTGGISSYSLILMAISFLQLHPRIDARRADENLGMLLVEFFELYGRNFNYLKTGIRIKEGGAYI
AKEEIMKAMTSGYRPSMLCIEDPLLPGNDVGRSSYGAMQVKQVFDYAYIVLSHAVSPLARSYPNRDSEST
LGRIIKVTQEVIDYRRWIKEKWGSRILPSPDLDNRIKIKERITTCNGEQMQSREPSSPYTQRLTLSLSSP
QLLSSGSSASSVSSLSGSDIDSDTPPCTTPSVYQFSLQAPTTLMASLPTALPMPSSKPQPAASRTLIMTT
NNQTRVTIPPPTLGVAPVPCRQAGVDGTTSLKAVHSVTSPAIPSASPNPLSSPHLYHKQHNGMKLSMKGS
HNHTQGGGYSSVGSGAVRPPVGNRGHHQYNRTGWRRKKHAHTRDSLPVSLSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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