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Report for CCDS26554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26554.1 Public Mus musculus 13 Pcbd2 23 108 98 CCDS HistoryNCBI Gene:72562Re-query CCDS DB by CCDS ID:26554.1Re-query CCDS DB by GeneID:72562See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021958.5 ENSMUSP00000021958.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021958.5Link to Ensembl Protein Viewer:ENSMUSP00000021958.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021958Re-query CCDS DB by Protein ID:ENSMUSP00000021958
Original member Current member NCBI NM_028281.1 NP_082557.1 Accepted alive Link to Nucleotide Sequence:NM_028281.1Link to Protein Sequence:NP_082557.1Re-query CCDS DB by Nucleotide ID:NM_028281Re-query CCDS DB by Protein ID:NP_082557Link to BLAST:NP_082557.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082557.1 136 Q9CZL5 136 100% 0 0

Chromosomal Locations for CCDS 26554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55727373 55727474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55732936 55733067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55775367 55775447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55776605 55776700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGGTGGCGGCAGCGGCGGTGGCTGTAGCGGCGGTGGGAGCGCGTAGCGCGGGGCGGTGGCTGGCGGCGC
TGCGCAGCCCGGGCGCGAGCAGGGCGGCCATGTCTTCAGATGCACAGTGGTTGACGGCAGAGGAGAGGGA
CCAACTTATTCCTGGCTTGAAAGCAGCAGGGTGGTCGGAACTGAGTGAGAGAGATGCCATCTACAAAGAG
TTCTCCTTCAAAAATTTCAATCAGGCGTTTGGCTTTATGTCCAGGGTTGCCCTGCAAGCAGAGAAGATGA
ATCACCACCCGGAATGGTTCAACGTCTACAACAAAGTCCAGATAACCCTCACCTCGCATGACTGTGGCGG
CCTGACCAAGCGGGATGTGAAGTTGGCCCAGTTCATTGAAAAAGCTGCTGCATCTCTGTGA

Translation (136 aa):
MVAAAAVAVAAVGARSAGRWLAALRSPGASRAAMSSDAQWLTAEERDQLIPGLKAAGWSELSERDAIYKE
FSFKNFNQAFGFMSRVALQAEKMNHHPEWFNVYNKVQITLTSHDCGGLTKRDVKLAQFIEKAAASL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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