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Report for CCDS26493.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26493.2 Public Mus musculus 13 Zfp169 23 108 98 CCDS HistoryNCBI Gene:67911Re-query CCDS DB by CCDS ID:26493.2Re-query CCDS DB by GeneID:67911See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 26493.2
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data. The use of an alternative upstream start codon would result in a protein that is 13 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26493.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110110.8 ENSMUSP00000105737.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110110.8Link to Ensembl Protein Viewer:ENSMUSP00000105737.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110110Re-query CCDS DB by Protein ID:ENSMUSP00000105737
Original member Current member EBI ENSMUST00000177530.7 ENSMUSP00000135414.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177530.7Link to Ensembl Protein Viewer:ENSMUSP00000135414.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177530Re-query CCDS DB by Protein ID:ENSMUSP00000135414
Original member Current member NCBI NM_001164575.1 NP_001158047.1 Accepted alive Link to Nucleotide Sequence:NM_001164575.1Link to Protein Sequence:NP_001158047.1Re-query CCDS DB by Nucleotide ID:NM_001164575Re-query CCDS DB by Protein ID:NP_001158047Link to BLAST:NP_001158047.1
Original member Current member NCBI NM_026450.3 NP_080726.3 Accepted alive Link to Nucleotide Sequence:NM_026450.3Link to Protein Sequence:NP_080726.3Re-query CCDS DB by Nucleotide ID:NM_026450Re-query CCDS DB by Protein ID:NP_080726Link to BLAST:NP_080726.3

Chromosomal Locations for CCDS 26493.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 48489454 48491393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48498323 48498418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48498780 48498906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48506907 48506939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2196 nt):
ATGGCCCCAGGGCTCCTGACAACCAGAGACAAGGCATTAATGGCCTTCCATGACGTGGCTGTGGCCTTCA
GCCAGATGGAGTGGGAGCTGCTGAGTCCTGCCCAGAGGATCCTGTACAGGGATGTAATGCTGGAGAACTA
TAGCCACCTTGTCTCCCTGGGAATTGCCTTTTCCAAACCAAAACTCATCACGCAGCTGGAACAAGGGGCA
GAACCCTGGAGAGATGGCAGCGGATGCTTTCTGGACCTTTGTCCAGAACCCAGGACAGAATTAGAGCCCT
CTCTTTCGTCCCCGGTATCCTTTGCTAGTCCGGAAGTCCTCAGAGTGTGTGTGCTGAATGGACCTCCCTC
TCAGACTTTTCCAAGCCCACCAGCAGGGAGCAACTTCCAGTCAGAAGCTCCAGGCTGTTCCAGCAATGAA
GGAGGTGAAGAGAGAGACAGCAGCGATGCTCTGTTGCAGAGGACAAGTCCAACGAGAATTCTGAAGACGT
TCTTTAGCCCATGTCAAGATCAGGCAGCATACTGGGTAGAAGGCGACAGTAAACAAACAGACCTTGGCCT
GGCCCCTGAGGAGGCAGTCACAGTGTTGAAGGGACCCGATGAGTCAGCATCTGGGGCCGTCCTACATGGA
GCATTTCCGCTAGGGCTTGATGATGTCACAAACCTGTTCAGCCCTCAGAAGCACCACGTGTTTCCTGACT
GCGGAGGGGGCTTTTGCCAGAGTTCTGACCTCATGAAGCTCCAGAGAATGGACGGAGTGGAGAAGCCTTA
CTCGTGTTCGGAGTGCGGGCACCAGTTCGCTCAGAAGGCGTCTCTCACGGTCCATCAGAGGAAACACTCT
GGAGAGAAGCCGCACGTGTGTGAGGAGTGTGGGCGAGGCTTCATGTATGTATCCTCCCTCAACAGCCACA
AGAAGATTATCCACTCTGGAGAGAGCCCCCTTGTTTGTCCCGAGTGTGGGCGTGGCTTCCGCCAGAAGAT
AGACCTCCTCCTCCACCAGCGGACTCACCTGGATAAAAAGCCCTTCGTGTGTCCCGAGTGTGGGAGGGGC
TTTTGCCGGAAAGCCTCGCTGCTACAGCACAGCTGGTCACACTCGGGTGACAACCCCTTCATCTGCTCGG
TGTGTGGGCGTGGCTTCAGGCTGCTCTCCCGGCTCCTCACTCACCAGGTCACACACTCTGGTGAGAAACC
TCACGTTTGCCCGGACTGCGGACAACGCTTTGGCCAAAAGGGTACGCTCATGAGACATCAGAAGACACAT
ACCGGGGAGAAGCCTTTTGTGTGTCGCCAGTGTGGCTGGAGTTTCACCCAGAAGGTTAACCTCATTAGGC
ACCAGAGGATTCACACAGAGGTAAAACCTTTCCTATGCCCTGAGTGTGGACGAGCCTTTGAGTTTAAGTC
GCTCCTCACCAGACACCGTAAAACGCACATGGGGGAGAAGCCCTACGTGTGCCCCCAGTGTGGTAGGGGG
TTTAGCCAGAAGTTCAACCTCATCGGGCACCAGAGGATTCATACAGGGGAGTTACCTTTTCTGTGCCCTG
AGTGTGGGCGTGCGTTTGTAAAGCAGTCCATGCTCATCAGACACCAGAGGACCCACGCAGGGTGGGAGAA
ACCTTACCAGTGTCCCGAGTGTGGACGCACCTTTGAGTTTAAGTCGCTCCTCACCAGACACCAGAAGATA
CACACGGGGGAGAAGCCTTATGTGTGTCCTCAGTGTGGCAGAGGGTTTAGCCAGAAGTTCAACCTCATTG
GGCACCAGAAGACACACACGGGGGAAAAGCCCTATGCCTGTCCCCAGTGTGGCCAGCGCTTCAGGCAGAA
GTTCAACCTCGCTAGGCACCAGAGGATTCACACGGGGGAGAAGCCATTCCTGTGTGCTGAGTGTGGGCGA
GCATTTGGAAAGAAGGTCTCTCTCATTAGACACCAGAGGACCCACGGAGAGGAGAAGCCTTACCAGTGTA
CTGAGTGTGGTCGAGCCTTTGAGTTTAAGTCTCTTTTCATCAGACACCAAAAGACACATACGGGGGAGAA
GCCCTACGTGTGCCCTGAGTGTGGCAAGGCATTTAGCCAAAAGTTCAACCTTATAGGGCACCAGAGGAGC
CATACAGGGGAGAAGCCTTACCTGTGCCCCCAGTGTGGGCGTGCCTTTGCTTTTAAGTCACTTCTTACTA
GACACCAGAGGACACACTCCAAGTAG

Translation (731 aa):
MAPGLLTTRDKALMAFHDVAVAFSQMEWELLSPAQRILYRDVMLENYSHLVSLGIAFSKPKLITQLEQGA
EPWRDGSGCFLDLCPEPRTELEPSLSSPVSFASPEVLRVCVLNGPPSQTFPSPPAGSNFQSEAPGCSSNE
GGEERDSSDALLQRTSPTRILKTFFSPCQDQAAYWVEGDSKQTDLGLAPEEAVTVLKGPDESASGAVLHG
AFPLGLDDVTNLFSPQKHHVFPDCGGGFCQSSDLMKLQRMDGVEKPYSCSECGHQFAQKASLTVHQRKHS
GEKPHVCEECGRGFMYVSSLNSHKKIIHSGESPLVCPECGRGFRQKIDLLLHQRTHLDKKPFVCPECGRG
FCRKASLLQHSWSHSGDNPFICSVCGRGFRLLSRLLTHQVTHSGEKPHVCPDCGQRFGQKGTLMRHQKTH
TGEKPFVCRQCGWSFTQKVNLIRHQRIHTEVKPFLCPECGRAFEFKSLLTRHRKTHMGEKPYVCPQCGRG
FSQKFNLIGHQRIHTGELPFLCPECGRAFVKQSMLIRHQRTHAGWEKPYQCPECGRTFEFKSLLTRHQKI
HTGEKPYVCPQCGRGFSQKFNLIGHQKTHTGEKPYACPQCGQRFRQKFNLARHQRIHTGEKPFLCAECGR
AFGKKVSLIRHQRTHGEEKPYQCTECGRAFEFKSLFIRHQKTHTGEKPYVCPECGKAFSQKFNLIGHQRS
HTGEKPYLCPQCGRAFAFKSLLTRHQRTHSK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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