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Report for CCDS26469.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26469.1 Public Mus musculus 13 Gcnt2 23 108 98 CCDS HistoryNCBI Gene:14538Re-query CCDS DB by CCDS ID:26469.1Re-query CCDS DB by GeneID:14538See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26469.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067778.7 ENSMUSP00000066467.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067778.7Link to Ensembl Protein Viewer:ENSMUSP00000066467.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000067778Re-query CCDS DB by Protein ID:ENSMUSP00000066467
Original member NCBI NM_133219.1 NP_573482.1 Updated not alive Link to Nucleotide Sequence:NM_133219.1Link to Protein Sequence:NP_573482.1Re-query CCDS DB by Nucleotide ID:NM_133219Re-query CCDS DB by Protein ID:NP_573482
Current member NCBI NM_133219.2 NP_573482.1 Accepted alive Link to Nucleotide Sequence:NM_133219.2Link to Protein Sequence:NP_573482.1Re-query CCDS DB by Nucleotide ID:NM_133219Re-query CCDS DB by Protein ID:NP_573482Link to BLAST:NP_573482.1

Chromosomal Locations for CCDS 26469.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 40917883 40918801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 40953576 40953671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 40958152 40958342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGAGCCTACGCGGGAAAGTTTTCGCTGTCTCTGCGCTCAGCGTGGTGATTTTTGTGGTTTTTTATCACA
GCCAGCTAAGCCTGCCCAACCTCTACCAGCAGCTCAACAGCTCCAGCGAAAGGACGTCTGTCACCATCTG
TGATTACGGCTTGCAAAATCATACGTTCTTCACGACGGGGGACACATCACCACATCCTTTAGAAAGACTC
TCCTGTCCTCAATACCGGATCCAGAGCCACTATATTACCAGTCCCCTTTCGGAAGAAGAGGCTGCCTTTC
CCCTGGCTTACATCATGGTGATCCACAAAGACTTCGATACCTTTGAAAGGCTCTTCAGGGCCATTTACAT
GCCCCAGAACGTCTACTGTGTGCATGTGGATAGTAAGGCGACAGACACCTTCAAAGAAGCGGTGCGGCAG
TTACTAAGCTGTTTCCCCAATGCCTTCCTGGCCTCTAAGGTGGAGCAGGTGGTCTATGGTGGCTTCTCTC
GGCTCCAGGCTGATCTGAACTGCATGAAAGATCTGGTGGCCTCCAAGGTCCCCTGGAAATATGTCCTCAA
CACCTGCGGGCAGGACTTCCCTTTGAAAACCAACAAGGAAATAATTAACCATCTGAAAAGATTTAAGGGG
AAAAACATCACTCCGGGAGTGCTGCCCCCTGCGTACATAGTTGTACGGACTAAATATGTACACCAGGAAC
GCAAAGGCAAAGACGGATATTTTATGCATAAAACAAATATTTTGAAGACTCCACCTCCACACCAACTGAT
CATCTACTTCGGCACAGCCTACGTGGCCCTCACCCGGGACTTTGTCAACTTTATCCTGAATGACGAAAGG
GCCATTGCTCTCTTAGAGTGGTCTAAAGATACCTATAGCCCTGATGAACATTTTTGGGTGACACTCAATA
GGATTCCAGGAGTCCCTGGCTCCATGCCACCAAACGCATCCTGGACGGGTAACCTCAGAGCTGTGAAGTG
GATGGACATGGAAGCGAAGCATGGAGGCTGCCATGGTCACTACGTCCATGGCATTTGTATCTATGGAAAC
GGAGACTTGCAGTGGCTGATTAATTCGCAAAGCCTGTTTGCTAACAAATTTGAACTCAACACATACCCTC
TTACCGTGGAATGCCTGGAACTGAGGCTTCGAGAAAGAACACTCAACCAGAGTGAGATCGCCATACAGCC
GAGCTGGTATTTCTGA

Translation (401 aa):
MSLRGKVFAVSALSVVIFVVFYHSQLSLPNLYQQLNSSSERTSVTICDYGLQNHTFFTTGDTSPHPLERL
SCPQYRIQSHYITSPLSEEEAAFPLAYIMVIHKDFDTFERLFRAIYMPQNVYCVHVDSKATDTFKEAVRQ
LLSCFPNAFLASKVEQVVYGGFSRLQADLNCMKDLVASKVPWKYVLNTCGQDFPLKTNKEIINHLKRFKG
KNITPGVLPPAYIVVRTKYVHQERKGKDGYFMHKTNILKTPPPHQLIIYFGTAYVALTRDFVNFILNDER
AIALLEWSKDTYSPDEHFWVTLNRIPGVPGSMPPNASWTGNLRAVKWMDMEAKHGGCHGHYVHGICIYGN
GDLQWLINSQSLFANKFELNTYPLTVECLELRLRERTLNQSEIAIQPSWYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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