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Report for CCDS26278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26278.1 Public Mus musculus 13 Zkscan8 23 108 98 CCDS HistoryNCBI Gene:93681Re-query CCDS DB by CCDS ID:26278.1Re-query CCDS DB by GeneID:93681See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26278.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045228.11 ENSMUSP00000040248.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045228.11Link to Ensembl Protein Viewer:ENSMUSP00000040248.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045228Re-query CCDS DB by Protein ID:ENSMUSP00000040248
Original member Current member NCBI NM_139141.4 NP_631880.2 Accepted alive Link to Nucleotide Sequence:NM_139141.4Link to Protein Sequence:NP_631880.2Re-query CCDS DB by Nucleotide ID:NM_139141Re-query CCDS DB by Protein ID:NP_631880Link to BLAST:NP_631880.2

Chromosomal Locations for CCDS 26278.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21520001 21520962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21521786 21521909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21522224 21522315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21525138 21525306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21526519 21526938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGGCTACAGAACCAAGAAAGCCTTCTTCAGCCCCATCTCCACCAGACCAGGCTCCTGAAGAGGATCTTG
TCATTGTCAAGATAGAGGAGGATCATGGTTGGGATGAGGAATCCGGTGTGCATGAGAACAACACACCTGG
CCAAGAACTGTTTCGTCTACGCTTCAGACAGCTCTGCTACCAGGAGACATTAGGACCTCGGGAAGCTCTG
ATCCAGCTCCGTGCATTTTGCCATCAGTGGCTGCGGCCAGACTTGAACAGCAAGGAGCAGATCCTGGAGC
TGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCAGGGGAGCTGCAGGCTCTGGTTAAGGAGCACCAGTT
ACAGAATGGAGAGGAGGTGGTAACCCTATTGGAGGACCTGGAAAGGCAAATTAATGTCCTAGGGCGGCCA
GTCTCAACTCATACACATGGGCACAGAGTACTCTGGGATGAAGTCATACCTTCAAAATCTGCATCAGAAC
CTCCAAGTATTCACGTACAATCCTTGGCCACCGTGCCCAAATCTCCAGTGCCCCAGAAACCACAGGACAG
GGGAAAGAGGCCAGATTTCACTTACAACGCCATGTCCTCTTCTCAGAAACCTACTCCTTCCCAGAAGGGA
AGTTCTGGAGATCAGGAAGTGACAGCTAGACTTCTCACTGCAGGGTTCCAGACTTTGGAAAGGATTGAAG
ACATGGCTGTGTCTCTTATTCGAGAGGAGTGGCTTCTTGATCCATCACAGAAGGATCTGAATAGAGATAA
CAGGCCCGAGAAATACAGAAACATGTTCTCCCTGGATGGCGAGACCAGGAGTGAGAACAAGGAATTATTT
CCAAAACAGGGAATATCTCCCGGAATCCAGCCACATGGAGAGGCAACTGCCAAGTGCAATGGGGATGTTA
TTGTGGGTCTTGCACATGGAGAAACCCAAGACCTTCTGGGCAAACTAGAGAGGCACCAGGGAAATCCCAC
ACAAGAGAGACGACATAAATGTGATGAATGTGGGAAAAGCTTTGCTCAGAACTCAGGCCTTGTTCGCCAC
TGGAGAATACACACTGGAGAGAAACCCTATCAGTGTACTGTGTGCGGTAAAGCCTTCAGTTACAGGTCGG
CCCTTCTTTCCCATCAGGATATCCACAACAAAGTGAAGCGCTATCACTGCAAGGAATGTGGTAAGGCCTT
CAGTCAGAACACAGGCTTGATCCTACACCAGAGAATCCACACTGGGGAGAAGCCCTATCAATGTAATCAG
TGTGGGAAGGCCTTTAGTCAGAGTGCAGGCCTTATTTTGCACCAGAGAATCCACAGTGGGGAGAGACCAT
ATGAATGTAATGAATGTGGAAAAGCTTTCAGTCATAGTTCACACCTCATTGGACATCAGAGAATTCACAC
TGGGGAGAAACCCTATGAGTGTGATGAGTGCGGGAAAACCTTCAGACGGAGCTCACATCTCATTGGCCAT
CAAAGAAGCCACACTGGGGAGAAGCCCTACAAATGCAATGAGTGTGGGAGGGCCTTTAGTCAGAAGTCGG
GCCTCATTGAACATCAGAGAATCCATACTGGAGAAAGACCCTATAAGTGTAAAGAATGTGGGAAAGCCTT
CAATGGGAATACTGGTCTCATTCAGCACCTGAGAATCCACACCGGGGAGAAGCCCTATCAGTGCAGTGAG
TGTAGGAAGGCCTTTATTCAGAGATCCAGCCTCATCCGGCATCAGAGAATCCACAGTGCAGAAAAGCCTC
AAAGCACAGGAGTTTAG

Translation (588 aa):
MATEPRKPSSAPSPPDQAPEEDLVIVKIEEDHGWDEESGVHENNTPGQELFRLRFRQLCYQETLGPREAL
IQLRAFCHQWLRPDLNSKEQILELLVLEQFLTILPGELQALVKEHQLQNGEEVVTLLEDLERQINVLGRP
VSTHTHGHRVLWDEVIPSKSASEPPSIHVQSLATVPKSPVPQKPQDRGKRPDFTYNAMSSSQKPTPSQKG
SSGDQEVTARLLTAGFQTLERIEDMAVSLIREEWLLDPSQKDLNRDNRPEKYRNMFSLDGETRSENKELF
PKQGISPGIQPHGEATAKCNGDVIVGLAHGETQDLLGKLERHQGNPTQERRHKCDECGKSFAQNSGLVRH
WRIHTGEKPYQCTVCGKAFSYRSALLSHQDIHNKVKRYHCKECGKAFSQNTGLILHQRIHTGEKPYQCNQ
CGKAFSQSAGLILHQRIHSGERPYECNECGKAFSHSSHLIGHQRIHTGEKPYECDECGKTFRRSSHLIGH
QRSHTGEKPYKCNECGRAFSQKSGLIEHQRIHTGERPYKCKECGKAFNGNTGLIQHLRIHTGEKPYQCSE
CRKAFIQRSSLIRHQRIHSAEKPQSTGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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