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Report for CCDS2625.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2625.2 Public Homo sapiens 3 SH3BP5 24 110 108 CCDS HistoryNCBI Gene:9467Re-query CCDS DB by CCDS ID:2625.2Re-query CCDS DB by GeneID:9467See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2625.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000383791.8 ENSP00000373301.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000383791.8Link to Ensembl Protein Viewer:ENSP00000373301.3Re-query CCDS DB by Nucleotide ID:ENST00000383791Re-query CCDS DB by Protein ID:ENSP00000373301
Original member Current member NCBI NM_004844.5 NP_004835.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004844.5Link to Protein Sequence:NP_004835.2Re-query CCDS DB by Nucleotide ID:NM_004844Re-query CCDS DB by Protein ID:NP_004835Link to BLAST:NP_004835.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004835.2 455 O60239-1 455 100% 0 0

Chromosomal Locations for CCDS 2625.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 15256086 15256303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15256853 15257113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15258831 15259050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15259761 15259803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15262159 15262289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15269713 15269877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15304103 15304231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15330504 15330566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 15332271 15332408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGGACGCGGCACTGAAGCGGAGCCGCTCGGAGGAGCCAGCCGAAATCCTGCCGCCTGCCCGGGACGAGG
AGGAGGAGGAGGAAGAGGGGATGGAGCAGGGGCTGGAGGAGGAAGAAGAGGTGGATCCCCGGATCCAGGG
AGAACTGGAGAAGTTAAATCAGTCCACGGATGATATCAACAGACGGGAGACTGAACTTGAGGATGCTCGT
CAGAAGTTCCGCTCTGTTCTGGTTGAAGCAACGGTGAAACTGGATGAACTGGTGAAGAAAATTGGCAAAG
CTGTGGAAGACTCCAAGCCCTACTGGGAGGCACGGAGGGTGGCGAGGCAGGCTCAGCTGGAAGCTCAGAA
AGCCACGCAGGACTTCCAGAGGGCCACAGAGGTGCTCCGTGCCGCCAAGGAGACCATCTCCCTGGCCGAG
CAGCGGCTGCTGGAGGATGACAAGCGGCAGTTCGACTCCGCCTGGCAGGAGATGCTGAATCACGCCACTC
AGAGGGTCATGGAGGCGGAGCAGACCAAGACCAGGAGCGAGCTGGTGCATAAGGAGACGGCAGCCAGGTA
CAATGCCGCCATGGGCCGCATGCGACAGCTGGAGAAGAAACTCAAGAGAGCCATCAACAAGTCCAAGCCT
TATTTTGAACTCAAGGCAAAGTACTATGTGCAGCTCGAGCAACTGAAAAAGACTGTGGATGACCTGCAGG
CCAAACTGACCCTGGCAAAAGGCGAGTACAAGATGGCCCTGAAGAACCTGGAGATGATCTCAGATGAGAT
CCACGAGCGGCGGCGCTCCAGTGCCATGGGGCCTCGGGGATGCGGTGTTGGTGCTGAGGGCAGCAGCACA
TCTGTGGAGGATCTGCCAGGGAGCAAACCTGAGCCTGATGCCATTTCTGTGGCCTCGGAGGCCTTTGAAG
ATGACAGCTGTAGCAACTTTGTGTCTGAAGATGACTCGGAAACCCAGTCCGTGTCCAGCTTTAGTTCAGG
ACCAACAAGCCCGTCTGAGATGCCTGACCAGTTCCCTGCGGTTGTGAGGCCTGGCAGCCTGGATCTGCCC
AGCCCTGTGTCCCTGTCAGAGTTTGGGATGATGTTCCCAGTGTTGGGCCCTCGAAGTGAATGCAGCGGGG
CCTCCTCCCCTGAATGTGAAGTAGAACGAGGAGACAGGGCAGAAGGGGCAGAGAATAAAACAAGTGACAA
AGCCAACAACAACCGGGGCCTCAGCAGTAGCAGTGGCAGTGGTGGCAGCAGTAAGAGCCAAAGCAGCACC
TCCCCTGAGGGCCAGGCCTTGGAGAACCGGATGAAGCAGCTCTCCCTACAGTGCTCAAAGGGAAGAGATG
GAATTATTGCTGACATAAAAATGGTGCAGATTGGCTGA

Translation (455 aa):
MDAALKRSRSEEPAEILPPARDEEEEEEEGMEQGLEEEEEVDPRIQGELEKLNQSTDDINRRETELEDAR
QKFRSVLVEATVKLDELVKKIGKAVEDSKPYWEARRVARQAQLEAQKATQDFQRATEVLRAAKETISLAE
QRLLEDDKRQFDSAWQEMLNHATQRVMEAEQTKTRSELVHKETAARYNAAMGRMRQLEKKLKRAINKSKP
YFELKAKYYVQLEQLKKTVDDLQAKLTLAKGEYKMALKNLEMISDEIHERRRSSAMGPRGCGVGAEGSST
SVEDLPGSKPEPDAISVASEAFEDDSCSNFVSEDDSETQSVSSFSSGPTSPSEMPDQFPAVVRPGSLDLP
SPVSLSEFGMMFPVLGPRSECSGASSPECEVERGDRAEGAENKTSDKANNNRGLSSSSGSGGSSKSQSST
SPEGQALENRMKQLSLQCSKGRDGIIADIKMVQIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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