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Report for CCDS26168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26168.1 Public Mus musculus 12 Dlk1 23 108 98 CCDS HistoryNCBI Gene:13386Re-query CCDS DB by CCDS ID:26168.1Re-query CCDS DB by GeneID:13386See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26168.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056110.14 ENSMUSP00000063104.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056110.14Link to Ensembl Protein Viewer:ENSMUSP00000063104.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000056110Re-query CCDS DB by Protein ID:ENSMUSP00000063104
Original member Current member EBI ENSMUST00000109844.10 ENSMUSP00000105470.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109844.10Link to Ensembl Protein Viewer:ENSMUSP00000105470.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000109844Re-query CCDS DB by Protein ID:ENSMUSP00000105470
Original member NCBI NM_010052.5 NP_034182.2 Updated not alive Link to Nucleotide Sequence:NM_010052.5Link to Protein Sequence:NP_034182.2Re-query CCDS DB by Nucleotide ID:NM_010052Re-query CCDS DB by Protein ID:NP_034182
Current member NCBI NM_010052.6 NP_034182.2 Accepted alive Link to Nucleotide Sequence:NM_010052.6Link to Protein Sequence:NP_034182.2Re-query CCDS DB by Nucleotide ID:NM_010052Re-query CCDS DB by Protein ID:NP_034182Link to BLAST:NP_034182.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034182.2 385 Q09163-1 385 99.4805% 0 2

Chromosomal Locations for CCDS 26168.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 109453660 109453726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109454985 109455048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109455493 109455623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109458074 109458215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109459607 109460360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGATCGCGACCGGAGCCCTCCTGCGCGTCCTCTTGCTCCTGCTGGCTTTCGGCCACAGCACCTATGGGG
CTGAATGCGACCCACCCTGTGACCCCCAGTATGGATTCTGCGAGGCTGACAATGTCTGCAGGTGCCATGT
TGGCTGGGAGGGTCCCCTCTGTGACAAGTGTGTAACTGCCCCTGGCTGTGTCAATGGAGTCTGCAAGGAA
CCATGGCAGTGCATCTGCAAGGATGGCTGGGACGGGAAATTCTGCGAAATAGACGTTCGGGCTTGCACCT
CAACCCCCTGCGCCAACAATGGAACTTGCGTGGACCTGGAGAAAGGCCAGTACGAATGCTCCTGCACACC
TGGGTTCTCTGGAAAGGACTGCCAGCACAAGGCTGGGCCCTGCGTGATCAATGGTTCTCCCTGCCAGCAC
GGAGGCGCCTGCGTGGATGATGAGGGCCAGGCCTCGCATGCTTCCTGCCTGTGCCCCCCTGGCTTCTCAG
GCAACTTCTGTGAGATCGTAGCCGCAACCAACAGCTGTACCCCTAACCCATGCGAGAACGATGGCGTCTG
CACCGACATCGGGGGTGACTTCCGTTGCCGCTGCCCAGCTGGATTCGTCGACAAGACCTGCAGCCGCCCG
GTGAGCAACTGCGCCAGTGGCCCGTGCCAGAACGGGGGCACCTGCCTCCAGCACACCCAGGTGAGCTTCG
AGTGTCTGTGCAAGCCCCCGTTCATGGGTCCCACGTGCGCGAAGAAGCGCGGGGCTAGCCCCGTGCAGGT
CACCCACCTGCCCAGCGGCTATGGGCTCACCTACCGCCTGACCCCCGGGGTGCACGAGCTGCCTGTTCAG
CAGCCCGAGCAACACATCCTGAAGGTGTCCATGAAAGAGCTCAACAAGAGTACCCCTCTCCTCACCGAGG
GACAGGCCATCTGCTTCACCATCCTGGGCGTGCTCACCAGCCTGGTGGTGCTGGGCACCGTGGCCATCGT
CTTTCTCAACAAGTGCGAAACCTGGGTGTCCAACCTGCGCTACAACCACATGCTTCGCAAGAAGAAGAAC
CTCCTGTTGCAGTATAACAGCGGCGAGGAGCTGGCGGTCAATATCATCTTCCCCGAGAAGATTGACATGA
CCACTTTCAACAAGGAGGCTGGTGATGAGGAGATCTAA

Translation (385 aa):
MIATGALLRVLLLLLAFGHSTYGAECDPPCDPQYGFCEADNVCRCHVGWEGPLCDKCVTAPGCVNGVCKE
PWQCICKDGWDGKFCEIDVRACTSTPCANNGTCVDLEKGQYECSCTPGFSGKDCQHKAGPCVINGSPCQH
GGACVDDEGQASHASCLCPPGFSGNFCEIVAATNSCTPNPCENDGVCTDIGGDFRCRCPAGFVDKTCSRP
VSNCASGPCQNGGTCLQHTQVSFECLCKPPFMGPTCAKKRGASPVQVTHLPSGYGLTYRLTPGVHELPVQ
QPEQHILKVSMKELNKSTPLLTEGQAICFTILGVLTSLVVLGTVAIVFLNKCETWVSNLRYNHMLRKKKN
LLLQYNSGEELAVNIIFPEKIDMTTFNKEAGDEEI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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