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Report for CCDS25974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25974.1 Public Mus musculus 12 Six4 23 108 98 CCDS HistoryNCBI Gene:20474Re-query CCDS DB by CCDS ID:25974.1Re-query CCDS DB by GeneID:20474See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043208.7 ENSMUSP00000036150.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043208.7Link to Ensembl Protein Viewer:ENSMUSP00000036150.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043208Re-query CCDS DB by Protein ID:ENSMUSP00000036150
Original member Current member NCBI NM_011382.3 NP_035512.1 Accepted alive Link to Nucleotide Sequence:NM_011382.3Link to Protein Sequence:NP_035512.1Re-query CCDS DB by Nucleotide ID:NM_011382Re-query CCDS DB by Protein ID:NP_035512Link to BLAST:NP_035512.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035512.1 775 Q61321-1 775 100% 0 0

Chromosomal Locations for CCDS 25974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 73103442 73104238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73108661 73109349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 73112343 73113184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2328 nt):
ATGTCCTCTTCCTCCCCCACCGGGCAGATTGCAAGTGCGGCGGACATCAAGCAGGAGAATGGGATGGAAA
GCGCCTCGGAAGGACAGGAGGCGCACCGAGAAGTGGCGGGGGGCGCGGCGGCTGGGCTGAGCCCCCCGGC
TCCAGCTCCTTTCCCCCTGGAGCCGGGGGACGCCGCGGCTGCCTCCAGGGTAAGCCGGGAGGAAGGGGCA
GCGGCGGCGGGAGCGGCAGATCAGGTACAACTCCACTCGGAACTTCTGGGCAGGCACCAGCACGCAGCCG
CCGCGCAGCCCCCACTGGCCTTCTCGCCGGACCATGTCGCCTGCGTGTGCGAGGCGTTGCAGCAGGGGGG
CAACCTGGACCGCCTGGCCCGGTTTCTTTGGTCCCTGCCCCAGAGCGATCTGCTACGTGGCAACGAGAGC
CTTCTGAAGGCGCGAGCGCTCGTGGCCTTCCACCAGGGCATCTACCCTGAGTTGTACAGCATCCTCGAGA
GCCACAGCTTCGAGTCGGCCAACCATCCGCTGCTGCAGCAGCTCTGGTACAAGGCGCGCTACACCGAGGC
CGAGCGAGCGCGCGGCCGGCCGCTGGGCGCCGTGGACAAGTACCGGCTGCGCAGGAAATTCCCCTTGCCC
CGCACCATCTGGGACGGCGAGGAGACGGTGTATTGTTTCAAGGAGAAGTCGCGCAACGCGCTCAAGGAGC
TCTACAAGCAGAATCGCTACCCCTCGCCGGCTGAGAAGCGGCACCTGGCCAAGATCACCGGCCTCTCCCT
CACCCAGGTCAGCAACTGGTTCAAGAACCGGCGGCAGCGTGACCGAAACCCCTCCGAGACCCAGTCCAAA
AGCGAATCGGATGGCAACCCCAGTACCGAGGATGAATCCAGCAAGGGACATGAGGATTTGTCTCCTCATC
CACTTTCAGGCGCATCTGATGGCGTCACCAACCTCAGCCTCTCTAGCCACGTGGAGCCAGTATATATGCA
ACAAATTGGAAATGCTAAGATATCACTAAGCTCGTCTGGAGTTTTGTTGAATGGAAGCTTAGTACCTGCA
AGTACTTCACCTGTCTTCCTTAATGGCAATTCTTTTATTCAGGGACACAATGGAGTTATCCTTAATGGAC
TGAATGTGGGAAATACACAGACAGTGTCACTGAACCCACCCAAAATGTCTTCAAACATTGTGGGCAATGG
CATAGCCATGACAGACATCCTGGGATCTACCTCCCAGGATGTGAAAGAATTCAAAGTCCTCCAGAGTTCT
GCTGTGAACTCAGCAGCCACCACCTCCTACAGCCCTAGTGCCCCTGTGTCATTCCCAGGGCTGATACCCT
GCACTGAAGTGAAAAGAGAAGGCATTCAGACAGTGGCCTCCCAGGACGGTGGCTCTGTGGTGACTTTTAC
TACACCCGTGCAAATTAACCAGTATGGCATTGTCCAGATCCCTAATTCTGGAGCCAACGGCCAGTTCCTT
AATGGGAGCATTGGATTCTCTCCACTGCAGCTGCCTCCTGTCTCAGTAGCAGCTTCACAAGGTAATCTTT
CAGTTACCCCAAGCACTTCGGACGGAAGCACATTTACAAGTGAGCCAGCCACAGTCCAGCACGGTAAACT
TTTCCTGAGCCCTCTTACCCCCAGTGCAGTGGTATACACCGTTCCTAATTCAGGCCAGACTGTAGGAGCT
GTGAAACAGGAAGGCTTAGAAAGAGGCCTGGTCTTTTCTCAGTTGATGCCTGTCAATCACAGTGCACAAG
TAAATGCAAGCCTGTCTTCGGAAAATCTCTCTGGGAGTGGCCTCCATCCTCTGACCTCGTCGTTGGTTAA
TGTGTCCGCCGCCCACGGTTTTTCCCTGACCCCCCCTACACTACTTAATCCCACTGAGCTCAACCCTGAC
CTTGCCGAGAGCCAGCCCGTGTCTGCACCTGTGGCAAGCAAATGTACTGTGTCATCTGTCAGCAACACTA
ACTATGCAACCCTTCAGAACTGTTCCCTTATTCCGGGGCAAGACCTATTGTCCGGCCCGATGACCCAGGC
TGCCCTGGGTGAGATCGTACCCACAGCTGAAGAGCAGGTGAGCCACGCCTCAACAGCAGTCCACCAGGAT
TTTGTCAGAGAACAGCGCTTGGTTCTGCAGTCAGTCCCTAACATAAAAGAGAATTTCTTACAAAATTCTG
AGAACAAAGCAACAAACAACTTAATGATGTTAGACTCGAAATCCAAGTACGTCCTGGACGGCATGGTTGA
AGCCGGCTGTGAAGACCTGGGAACGGACAAAAAAGAGCTGGCCAAGCTCCAAACCGTCCAGTTGGATGAA
GACATGCAAGACTTATAA

Translation (775 aa):
MSSSSPTGQIASAADIKQENGMESASEGQEAHREVAGGAAAGLSPPAPAPFPLEPGDAAAASRVSREEGA
AAAGAADQVQLHSELLGRHQHAAAAQPPLAFSPDHVACVCEALQQGGNLDRLARFLWSLPQSDLLRGNES
LLKARALVAFHQGIYPELYSILESHSFESANHPLLQQLWYKARYTEAERARGRPLGAVDKYRLRRKFPLP
RTIWDGEETVYCFKEKSRNALKELYKQNRYPSPAEKRHLAKITGLSLTQVSNWFKNRRQRDRNPSETQSK
SESDGNPSTEDESSKGHEDLSPHPLSGASDGVTNLSLSSHVEPVYMQQIGNAKISLSSSGVLLNGSLVPA
STSPVFLNGNSFIQGHNGVILNGLNVGNTQTVSLNPPKMSSNIVGNGIAMTDILGSTSQDVKEFKVLQSS
AVNSAATTSYSPSAPVSFPGLIPCTEVKREGIQTVASQDGGSVVTFTTPVQINQYGIVQIPNSGANGQFL
NGSIGFSPLQLPPVSVAASQGNLSVTPSTSDGSTFTSEPATVQHGKLFLSPLTPSAVVYTVPNSGQTVGA
VKQEGLERGLVFSQLMPVNHSAQVNASLSSENLSGSGLHPLTSSLVNVSAAHGFSLTPPTLLNPTELNPD
LAESQPVSAPVASKCTVSSVSNTNYATLQNCSLIPGQDLLSGPMTQAALGEIVPTAEEQVSHASTAVHQD
FVREQRLVLQSVPNIKENFLQNSENKATNNLMMLDSKSKYVLDGMVEAGCEDLGTDKKELAKLQTVQLDE
DMQDL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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