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Report for CCDS25896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25896.1 Public Mus musculus 12 Lrrn3 23 108 98 CCDS HistoryNCBI Gene:16981Re-query CCDS DB by CCDS ID:25896.1Re-query CCDS DB by GeneID:16981See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25896.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043884.5 ENSMUSP00000043818.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043884.5Link to Ensembl Protein Viewer:ENSMUSP00000043818.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000043884Re-query CCDS DB by Protein ID:ENSMUSP00000043818
Original member Current member NCBI NM_001271708.1 NP_001258637.1 Accepted alive Link to Nucleotide Sequence:NM_001271708.1Link to Protein Sequence:NP_001258637.1Re-query CCDS DB by Nucleotide ID:NM_001271708Re-query CCDS DB by Protein ID:NP_001258637Link to BLAST:NP_001258637.1
Original member Current member NCBI NM_001271709.1 NP_001258638.1 Accepted alive Link to Nucleotide Sequence:NM_001271709.1Link to Protein Sequence:NP_001258638.1Re-query CCDS DB by Nucleotide ID:NM_001271709Re-query CCDS DB by Protein ID:NP_001258638Link to BLAST:NP_001258638.1
Original member Current member NCBI NM_010733.3 NP_034863.1 Accepted alive Link to Nucleotide Sequence:NM_010733.3Link to Protein Sequence:NP_034863.1Re-query CCDS DB by Nucleotide ID:NM_010733Re-query CCDS DB by Protein ID:NP_034863Link to BLAST:NP_034863.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258637.1 707 Q8CBC6 707 100% 0 0
NP_001258638.1 707 Q8CBC6 707 100% 0 0
NP_034863.1 707 Q8CBC6 707 100% 0 0

Chromosomal Locations for CCDS 25896.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 41452193 41454316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGAAGGACACGCCACTCCAAGTCCATGTGCTACTTGGCCTAGCTATCACTACACTAGTACAAGCTATAG
AT
AAAAAAGTGGATTGCCCCCAATTATGTACCTGTGAGATCAGGCCTTGGTTTACCCCGAGATCCATCTA
T
ATGGAAGCATCGACAGTGGACTGTAATGATTTAGGGCTTTTAAACTTCCCAGCCAGATTGCCTGCCGAC
ACA
CAGATTCTGCTCCTACAGACTAACAATATTGCAAGAATTGAACATTCCACAGACTTCCCAGTGAACC
TG
ACTGGCCTGGACTTATCTCAAAACAATTTATCTTCAGTCACTAATATTAATGTACAAAAGATGTCTCA
G
CTTCTTTCTGTGTACCTAGAGGAAAACAAGCTAACTGAGCTGCCGGAAAAGTGTCTATATGGACTGAGC
AAC
TTGCAGGAACTCTACGTTAATCACAACCTGCTCTCTACCATTTCTCCCGGAGCCTTCATTGGCCTAC
AT
AATCTTCTCCGGCTTCATCTCAACTCAAACAGACTGCAGATGATCAACAGTCAATGGTTTGATGCTCT
T
CCCAATCTCGAGATTCTGATGCTTGGGGACAACCCCATCATCAGGATCAAGGACATGAACTTTCAGCCT
CTT
GTCAAGCTTCGCAGCCTGGTTATAGCTGGCATAAACCTCACGGAAATACCAGACGACGCCTTGGCTG
GC
CTGGAGAACCTAGAAAGCATCTCCTTTTATGATAACAGGCTCAGTAAGGTTCCCCAGGTTGCACTTCA
A
AAAGCCGTTAACCTCAAGTTTTTGGATCTAAATAAAAATCCTATTAACAGAATACGGAGGGGTGATTTT
AGC
AATATGCTACATTTGAAGGAATTGGGGATAAACAATATGCCTGAACTTGTCTCCATTGACAGTCTCG
CT
GTGGATAACTTGCCAGATTTGAGAAAAATAGAAGCTACTAACAACCCCAGATTGTCTTACATTCACCC
T
AATGCATTTTTCAGACTCCCAAAGCTAGAATCTCTCATGCTGAACACCAACGCCCTCAGTGCCCTCTAC
CAC
GGCACCATAGAGTCTTTGCCGAACCTCAAGGAAATCAGCATACATAGCAATCCCATCCGTTGCGACT
GT
GTAATCCGCTGGATTAACATGAACAAAACCAACATTCGGTTTATGGAACCAGACTCGCTGTTCTGTGT
G
GACCCACCTGAATTCCAAGGCCAGAATGTTCGGCAAGTGCATTTCAGGGATATGATGGAAATTTGCCTC
CCT
CTTATAGCTCCTGAGAGCTTTCCTTCTGACCTGGATGTAGAAGCTGACAGCTATGTGTCGCTTCACT
GC
AGAGCTACTGCAGAACCCCAGCCAGAAATCTACTGGATCACACCTTCTGGTAAAAAACTATTGCCAAA
T
ACAATGAGAGAGAAGTTCTATGTTCATTCTGAAGGCACACTAGAGATAAGAGGCATAACCCCAAAGGAA
GGG
GGGTTGTACACCTGCATAGCAACTAACCTAGTCGGTGCTGATTTGAAGTCGATTATGATCAAAGTGG
GA
GGTTCTGTTCCTCAGGATAATAATGGGTCATTGAATATTAAAATAAGAGATATCAGGGCCAATTCTGT
T
CTGGTGTCCTGGAAAGCGAGCTCTAAAATCCTCAAATCCAGCGTTAAGTGGACAGCCTTTGTCAAGACT
GAA
GACTCTCATGCTGCCCAAAGTGCTCGAATACCATTTGATGTCAAGGTATATAATCTTACTCATCTGA
AA
CCATCTACCGAGTACAAAATTTGTATTGATATTCCCACCGTCTATCAGAAAAGCAGAAAACAATGTGT
G
AATGTCACCACAAAAAGTCTGGAGCATGACGGAAAAGAATATGGAAAGAATCATACAGTATTTGTGGCC
TGT
GTTGGAGGCCTTCTAGGGATCATTGGTGTAATGTGTCTTTTCAGCTGTGTCTCACAAGAAGGGAGCA
GT
GAGGGTGAGCACAGCTATGCTGTGAATCACTGTCACAAGCCAGCCTTGGCTTTCAGTGAGCTTTACCC
T
CCTCTAATCAACCTCTGGGAGTCCAGCAAAGAAAAACGGGCAACACTGGAAGTAAAAGCAACGGCTATA
GGA
GTGCCGACAAATATGTCCTAA


Translation (707 aa):
MKDTPLQVHVLLGLAITTLVQAIDKKVDCPQLCTCEIRPWFTPRSIYMEASTVDCNDLGLLNFPARLPAD
T
QILLLQTNNIARIEHSTDFPVNLTGLDLSQNNLSSVTNINVQKMSQLLSVYLEENKLTELPEKCLYGLS
N
LQELYVNHNLLSTISPGAFIGLHNLLRLHLNSNRLQMINSQWFDALPNLEILMLGDNPIIRIKDMNFQP
L
VKLRSLVIAGINLTEIPDDALAGLENLESISFYDNRLSKVPQVALQKAVNLKFLDLNKNPINRIRRGDF
S
NMLHLKELGINNMPELVSIDSLAVDNLPDLRKIEATNNPRLSYIHPNAFFRLPKLESLMLNTNALSALY
H
GTIESLPNLKEISIHSNPIRCDCVIRWINMNKTNIRFMEPDSLFCVDPPEFQGQNVRQVHFRDMMEICL
P
LIAPESFPSDLDVEADSYVSLHCRATAEPQPEIYWITPSGKKLLPNTMREKFYVHSEGTLEIRGITPKE
G
GLYTCIATNLVGADLKSIMIKVGGSVPQDNNGSLNIKIRDIRANSVLVSWKASSKILKSSVKWTAFVKT
E
DSHAAQSARIPFDVKVYNLTHLKPSTEYKICIDIPTVYQKSRKQCVNVTTKSLEHDGKEYGKNHTVFVA
C
VGGLLGIIGVMCLFSCVSQEGSSEGEHSYAVNHCHKPALAFSELYPPLINLWESSKEKRATLEVKATAI
G
VPTNMS




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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