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Report for CCDS25717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25717.1 Public Mus musculus 11 Slc26a11 23 108 98 CCDS HistoryNCBI Gene:268512Re-query CCDS DB by CCDS ID:25717.1Re-query CCDS DB by GeneID:268512See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25717.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050880.7 ENSMUSP00000050999.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050880.7Link to Ensembl Protein Viewer:ENSMUSP00000050999.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050880Re-query CCDS DB by Protein ID:ENSMUSP00000050999
Original member Current member NCBI NM_178743.3 NP_848858.2 Accepted alive Link to Nucleotide Sequence:NM_178743.3Link to Protein Sequence:NP_848858.2Re-query CCDS DB by Nucleotide ID:NM_178743Re-query CCDS DB by Protein ID:NP_848858Link to BLAST:NP_848858.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848858.2 593 Q80ZD3-1 593 100% 0 0

Chromosomal Locations for CCDS 25717.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119356851 119357033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119357978 119358170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119359297 119359382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119362217 119362296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119363400 119363542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119368664 119368839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119369193 119369265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119370749 119370799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119373111 119373171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119374485 119374540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119374765 119374905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119376782 119376909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119377169 119377268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119377694 119377827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119379859 119379931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119380185 119380288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGCACCAGACACATGCTGCTGCTCTGCTACGGCCCTGAGGAGGAGGCTACCCGTCCTGGCCTGGGTGC
CTGACTACTCTCTGCAGTGGCTGAGGCTGGACTTCATCGCTGGACTTTCCGTGGGACTCACCGTCATTCC
CCAGGCCCTGGCCTATGCAGAAGTGGCTGGACTCCCACCCCAGTACGGCCTCTACTCTGCCTTCATGGGA
TGCTTCGTGTATTTCTTCCTGGGCACCTCCCGGGATGTGACTCTGGGCCCCACGGCTATCATGTCTCTCC
TGGTGTCCTTCTACACCTTCCGTGAGCCTGCCTATGCTGTGCTGCTTGCCTTCCTGTCTGGGTGTATCCA
GCTGGCCATGGGGCTCCTGCATTTGGGGTTCCTGCTGGACTTCATCTCCTGCCCTGTCATTAAAGGCTTC
ACCTCCGCTGCCAGCATCACAATTGGCTTTGGACAGATCAAGAACCTGCTGGGATTGCAGAAAATCCCCC
GGCAGTTCTTCCTCCAGGTGTACCACACCTTCCTCCACATCGGAGAGACCAGGGTAGGCGACGCTGTCCT
CGGACTGGCCTCCATGTTGCTGCTGCTTGTGCTGAAGTGTATGCGGGAACACATGCCTCCTCCCCATCCT
GAGATGCCCCTTGCCGTGAAGTTCAGCCGTGGGCTGGTGTGGACTGTCACAACAGCTCGCAATGCCCTGG
TGGTCTCCTCCGCGGCTCTGATTGCTTACGCCTTCGAGGTGACAGGATCCCATCCCTTTGTTCTGACTGG
AAAGATCGCCGAGGGGCTCCCTCCGGTGCGGATCCCACCCTTCTCAGTGACCAGGGACAATAAGACCATC
TCGTTCTCTGAGATGGTGCAGGACATGGGGGCCGGACTGGCTGTGGTACCTCTGATGGGGCTCCTGGAGA
GCATTGCCGTGGCCAAATCCTTCGCGTCTCAGAATAACTACCGCATTGATGCTAACCAGGAACTACTGGC
CATTGGCCTCACCAATGTGCTGGGCTCCCTCGTCTCCTCTTACCCAGTCACTGGCAGCTTTGGGCGGACA
GCTGTGAATGCCCAGACAGGGGTGTGTACCCCGGCAGGAGGCCTGGTGACTGGTGCCCTGGTGCTGCTGT
CCCTGAACTACTTGACCTCACTCTTCTCCTATATCCCCAAGTCTGCCCTGGCTGCCGTGATCATCACGGC
TGTGACCCCACTCTTTGATGTCAAGATCTTCAGGAGTCTCTGGCGCGTTCAGAGGCTGGATCTGCTACCA
CTGTGTGTGACGTTCCTGCTGTCCTTCTGGGAGATCCAGTACGGTATCCTGGCCGGTAGCCTGGTGTCTT
TGCTCATTCTCCTGCACTCGGTAGCTAGGCCCAAGACTCAGGTGTCAGAAGGACAAATTTTTGTTCTTCA
GCCGGCCAGCGGCCTGTACTTCCCTGCAATTGATGCCCTCCGAGAGGCAATAACGAACCGGGCACTGGAA
GCATCCCCACCACGTTCCGCGGTTCTGGAGTGCACGCATATCAGCAGTGTAGACTACACCGTGATCGTGG
GACTCGGTGAGCTCCTGGAGGACTTCCAGAAGAAAGGAGTCGCCCTGGCCTTTGTTGGCCTACAGGTGCC
CGTGCTCCGCACACTGTTGGCCGCTGACCTCAAGGGGTTCCGTTACTTCACCACTCTGGAGGAGGCTGAG
AAATTCCTGCAGCAGGAACCAGGAACTGAGCCCAACAGCATCCATGAAGATGCTGTTCCAGAGCAAAGGA
GCTCCCTGCTCAAGTCTCCCTCCGGCCCCTGA

Translation (593 aa):
MAPDTCCCSATALRRRLPVLAWVPDYSLQWLRLDFIAGLSVGLTVIPQALAYAEVAGLPPQYGLYSAFMG
CFVYFFLGTSRDVTLGPTAIMSLLVSFYTFREPAYAVLLAFLSGCIQLAMGLLHLGFLLDFISCPVIKGF
TSAASITIGFGQIKNLLGLQKIPRQFFLQVYHTFLHIGETRVGDAVLGLASMLLLLVLKCMREHMPPPHP
EMPLAVKFSRGLVWTVTTARNALVVSSAALIAYAFEVTGSHPFVLTGKIAEGLPPVRIPPFSVTRDNKTI
SFSEMVQDMGAGLAVVPLMGLLESIAVAKSFASQNNYRIDANQELLAIGLTNVLGSLVSSYPVTGSFGRT
AVNAQTGVCTPAGGLVTGALVLLSLNYLTSLFSYIPKSALAAVIITAVTPLFDVKIFRSLWRVQRLDLLP
LCVTFLLSFWEIQYGILAGSLVSLLILLHSVARPKTQVSEGQIFVLQPASGLYFPAIDALREAITNRALE
ASPPRSAVLECTHISSVDYTVIVGLGELLEDFQKKGVALAFVGLQVPVLRTLLAADLKGFRYFTTLEEAE
KFLQQEPGTEPNSIHEDAVPEQRSSLLKSPSGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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