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Report for CCDS25678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25678.1 Public Mus musculus 11 Jmjd6 23 108 98 CCDS HistoryNCBI Gene:107817Re-query CCDS DB by CCDS ID:25678.1Re-query CCDS DB by GeneID:107817See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047616.9 ENSMUSP00000047570.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047616.9Link to Ensembl Protein Viewer:ENSMUSP00000047570.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000047616Re-query CCDS DB by Protein ID:ENSMUSP00000047570
Original member Current member NCBI NM_033398.3 NP_203971.2 Accepted alive Link to Nucleotide Sequence:NM_033398.3Link to Protein Sequence:NP_203971.2Re-query CCDS DB by Nucleotide ID:NM_033398Re-query CCDS DB by Protein ID:NP_203971Link to BLAST:NP_203971.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_203971.2 403 Q9ERI5-1 403 100% 0 0

Chromosomal Locations for CCDS 25678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116837632 116837763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116838990 116839128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116840410 116840545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116841069 116841355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116842332 116842720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116843065 116843193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGAACCACAAGAGCAAGAAGCGCATCCGCGAGGCCAAGCGAAGTGCGCGGCCGGAGCTCAAGGACTCGC
TCGACTGGACCCGGCACAACTACTACGAGAGCTACCCGCTGAACCCCGCGGCCGTGCCGGATAACGTGGA
GAGAGCTGATGCCTTACAGCTGTCGGTGAAAGAGTTCGTGGAGCGCTACGAGAGGCCTTACAAGCCCGTG
GTTCTGCTCAATGCACAAGAGGGCTGGTCCGCACAGGAGAAATGGACTCTGGAGCGCCTCAAAAGGAAAT
ACCGGAACCAGAAGTTCAAGTGCGGCGAGGATAATGACGGCTACTCGGTTAAGATGAAGATGAAGTACTA
CATCGAGTACATGGAGAGCACCCGCGATGACAGTCCCCTTTACATCTTCGATAGCAGCTATGGCGAACAC
CCCAAAAGAAGGAAACTTTTGGAAGACTACAAGGTGCCCAAGTTTTTCACAGATGATCTTTTCCAATACG
CGGGGGAGAAACGCAGACCCCCTTACAGGTGGTTTGTGATGGGGCCACCGCGTTCTGGAACTGGGATTCA
CATCGACCCTCTGGGGACCAGTGCCTGGAATGCCTTAGTTCAGGGTCACAAGCGGTGGTGCCTCTTCCCA
ACAAACACACCCAGAGAACTCATCAAGGTGACCCGAGAAGAAGGAGGGAACCAACAGGATGAAGCAATTA
CCTGGTTTAATGTCATCTATCCCCGGACACAGCTTCCAACCTGGCCACCTGAATTCAAACCCCTGGAGAT
ATTACAGAAACCAGGAGAAACTGTCTTTGTACCAGGGGGCTGGTGGCATGTTGTCCTCAACCTTGACACC
ACCATTGCCATCACCCAGAACTTTGCCAGCAGCACCAACTTCCCTGTTGTGTGGCACAAGACGGTAAGAG
GGAGACCAAAGTTATCAAGGAAGTGGTATAGGATCTTGAAACAGGAGCACCCTGAGCTGGCAGTCCTGGC
CGACGCAGTTGACCTCCAGGAGTCCACAGGCATTGCCTCTGACAGCTCCAGCGACTCTTCTAGCTCCTCT
AGTTCCAGCTCGTCAGACTCGGACTCAGAGTGTGAATCTGGGTCAGAAGGTGATGGGACGACACACCGCA
GGAAGAAGAGGAGAACCTGCAGCATGGTGGGAAATGGGGACACTACCTCCCAGGATGACTGTGTGAGCAA
AGAGCGCAGCTCCTCCAGGTGA

Translation (403 aa):
MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESYPLNPAAVPDNVERADALQLSVKEFVERYERPYKPV
VLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEYMESTRDDSPLYIFDSSYGEH
PKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFP
TNTPRELIKVTREEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDT
TIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILKQEHPELAVLADAVDLQESTGIASDSSSDSSSSS
SSSSSDSDSECESGSEGDGTTHRRKKRRTCSMVGNGDTTSQDDCVSKERSSSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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