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Report for CCDS25573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25573.1 Public Mus musculus 11 Prkca 23 108 98 CCDS HistoryNCBI Gene:18750Re-query CCDS DB by CCDS ID:25573.1Re-query CCDS DB by GeneID:18750See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059595.10 ENSMUSP00000062392.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059595.10Link to Ensembl Protein Viewer:ENSMUSP00000062392.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059595Re-query CCDS DB by Protein ID:ENSMUSP00000062392
Original member Current member NCBI NM_011101.3 NP_035231.2 Accepted alive Link to Nucleotide Sequence:NM_011101.3Link to Protein Sequence:NP_035231.2Re-query CCDS DB by Nucleotide ID:NM_011101Re-query CCDS DB by Protein ID:NP_035231Link to BLAST:NP_035231.2

Chromosomal Locations for CCDS 25573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 107939516 107939680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107951466 107951606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107953642 107953749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107961573 107961653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107978234 107978372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107979203 107979265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107981611 107981702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107983885 107984058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107986248 107986385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108012627 108012723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108012945 108013079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108014225 108014381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108053975 108054103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108057762 108057873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108192130 108192212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108340646 108340677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108343495 108343667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGGCTGACGTTTACCCGGCCAACGACTCCACGGCGTCTCAGGACGTGGCCAACCGCTTCGCCCGCAAAG
GGGCGCTGAGGCAGAAGAACGTGCATGAGGTGAAAGACCACAAATTCATCGCCCGCTTCTTCAAGCAACC
CACCTTCTGCAGCCACTGCACCGACTTCATCTGGGGGTTTGGGAAACAAGGCTTCCAGTGCCAAGTTTGC
TGTTTTGTGGTTCATAAGAGGTGCCATGAGTTCGTTACGTTCTCTTGTCCGGGTGCGGATAAGGGACCTG
ACACTGACGACCCCAGGAGCAAGCACAAGTTCAAAATCCACACATACGGAAGCCCTACCTTCTGTGATCA
CTGTGGGTCCCTGCTCTATGGACTTATCCACCAAGGGATGAAATGTGACACCTGCGACATGAATGTTCAC
AAGCAGTGTGTGATCAATGTCCCTAGCCTCTGCGGAATGGATCACACAGAGAAGAGGGGGCGGATTTATC
TGAAGGCTGAGGTCACTGATGAAAAGCTCCACGTCACGGTACGAGATGCAAAAAATCTAATCCCTATGGA
TCCAAATGGGCTTTCGGATCCTTATGTGAAGCTGAAACTTATCCCTGACCCCAAGAATGAGAGCAAACAG
AAAACCAAAACCATCCGCTCCACACTGAATCCTCAGTGGAATGAGTCCTTCACGTTCAAATTAAAACCTT
CAGACAAAGACCGGCGACTGTCTGTAGAAATCTGGGACTGGGATCGGACGACTCGGAATGACTTCATGGG
ATCCCTTTCCTTTGGTGTCTCAGAGCTAATGAAGATGCCGGCCAGTGGATGGTATAAACTGCTCAACCAA
GAAGAGGGCGAATACTACAATGTGCCCATTCCAGAAGGAGATGAAGAAGGCAACATGGAACTCAGGCAGA
AGTTTGAGAAAGCCAAGCTAGGCCCTGCTGGTAACAAAGTCATCAGCCCTTCAGAAGACAGAAAGCAACC
ATCCAACAACCTGGACAGAGTGAAACTCACAGACTTCAACTTCCTCATGGTGCTGGGGAAGGGGAGTTTT
GGGAAGGTGATGCTTGCTGACAGGAAGGGAACGGAGGAACTGTACGCCATCAAGATCCTGAAGAAGGACG
TGGTGATCCAGGACGACGACGTGGAGTGCACCATGGTGGAGAAGCGCGTGCTGGCCCTGCTGGACAAGCC
GCCATTTCTGACACAGCTGCACTCCTGCTTCCAGACAGTGGACCGGCTGTACTTCGTCATGGAATACGTC
AACGGCGGGGACCTCATGTACCACATTCAGCAAGTCGGGAAATTTAAGGAGCCACAAGCAGTATTCTACG
CAGCCGAGATCTCCATCGGACTGTTCTTCCTTCATAAAAGAGGGATCATTTACAGGGATCTGAAGCTGGA
CAATGTCATGCTGGACTCAGAAGGGCACATCAAAATCGCCGACTTTGGGATGTGCAAGGAACACATGATG
GATGGAGTCACGACCAGGACCTTCTGTGGGACTCCGGACTACATTGCCCCAGAGATAATCGCTTACCAGC
CGTACGGGAAGTCTGTAGATTGGTGGGCGTACGGTGTGCTGCTGTACGAGATGCTAGCCGGGCAGCCTCC
GTTTGATGGTGAAGATGAAGATGAACTGTTTCAGTCTATAATGGAGCACAACGTGTCCTACCCCAAATCC
TTGTCCAAGGAAGCCGTCTCTATCTGCAAAGGACTTATGACCAAACACCCTGCCAAGCGGCTGGGCTGCG
GGCCCGAGGGAGAGAGGGATGTCAGAGAGCATGCCTTCTTCAGGAGAATCGACTGGGAGAAACTGGAGAA
CAGGGAGATCCAACCACCATTCAAGCCCAAAGTGTGTGGCAAAGGAGCAGAAAACTTTGACAAGTTCTTC
ACGCGAGGACAGCCTGTCTTAACACCACCAGATCAGCTGGTCATTGCTAACATAGACCAATCTGATTTTG
AAGGGTTCTCGTATGTCAACCCCCAGTTTGTGCACCCAATCTTGCAAAGTGCAGTATGA

Translation (672 aa):
MADVYPANDSTASQDVANRFARKGALRQKNVHEVKDHKFIARFFKQPTFCSHCTDFIWGFGKQGFQCQVC
CFVVHKRCHEFVTFSCPGADKGPDTDDPRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVH
KQCVINVPSLCGMDHTEKRGRIYLKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQ
KTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKLLNQ
EEGEYYNVPIPEGDEEGNMELRQKFEKAKLGPAGNKVISPSEDRKQPSNNLDRVKLTDFNFLMVLGKGSF
GKVMLADRKGTEELYAIKILKKDVVIQDDDVECTMVEKRVLALLDKPPFLTQLHSCFQTVDRLYFVMEYV
NGGDLMYHIQQVGKFKEPQAVFYAAEISIGLFFLHKRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMM
DGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKS
LSKEAVSICKGLMTKHPAKRLGCGPEGERDVREHAFFRRIDWEKLENREIQPPFKPKVCGKGAENFDKFF
TRGQPVLTPPDQLVIANIDQSDFEGFSYVNPQFVHPILQSAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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