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Report for CCDS25504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25504.1 Public Mus musculus 11 Gjc1 23 108 98 CCDS HistoryNCBI Gene:14615Re-query CCDS DB by CCDS ID:25504.1Re-query CCDS DB by GeneID:14615See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068933.11 ENSMUSP00000066901.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068933.11Link to Ensembl Protein Viewer:ENSMUSP00000066901.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000068933Re-query CCDS DB by Protein ID:ENSMUSP00000066901
Original member Current member EBI ENSMUST00000092567.10 ENSMUSP00000090228.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092567.10Link to Ensembl Protein Viewer:ENSMUSP00000090228.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000092567Re-query CCDS DB by Protein ID:ENSMUSP00000090228
Original member Current member EBI ENSMUST00000107075.8 ENSMUSP00000102690.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107075.8Link to Ensembl Protein Viewer:ENSMUSP00000102690.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107075Re-query CCDS DB by Protein ID:ENSMUSP00000102690
Original member Current member NCBI NM_001159382.1 NP_001152854.1 Accepted alive Link to Nucleotide Sequence:NM_001159382.1Link to Protein Sequence:NP_001152854.1Re-query CCDS DB by Nucleotide ID:NM_001159382Re-query CCDS DB by Protein ID:NP_001152854Link to BLAST:NP_001152854.1
Original member Current member NCBI NM_001159383.1 NP_001152855.1 Accepted alive Link to Nucleotide Sequence:NM_001159383.1Link to Protein Sequence:NP_001152855.1Re-query CCDS DB by Nucleotide ID:NM_001159383Re-query CCDS DB by Protein ID:NP_001152855Link to BLAST:NP_001152855.1
Original member Current member NCBI NM_001359040.1 NP_001345969.1 Accepted alive Link to Nucleotide Sequence:NM_001359040.1Link to Protein Sequence:NP_001345969.1Re-query CCDS DB by Nucleotide ID:NM_001359040Re-query CCDS DB by Protein ID:NP_001345969Link to BLAST:NP_001345969.1
Original member Current member NCBI NM_008122.3 NP_032148.1 Accepted alive Link to Nucleotide Sequence:NM_008122.3Link to Protein Sequence:NP_032148.1Re-query CCDS DB by Nucleotide ID:NM_008122Re-query CCDS DB by Protein ID:NP_032148Link to BLAST:NP_032148.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152854.1 396 P28229 396 100% 0 0
NP_001152855.1 396 P28229 396 100% 0 0
NP_001345969.1 396 P28229 396 100% 0 0
NP_032148.1 396 P28229 396 100% 0 0

Chromosomal Locations for CCDS 25504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102799985 102801175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGAGTTGGAGCTTCCTGACTCGCCTGCTAGAGGAGATCCACAACCATTCGACATTTGTAGGGAAGATCT
GGCTCACTGTGCTGATTGTCTTTCGAATTGTCCTAACTGCTGTAGGAGGAGAGTCCATCTACTATGATGA
ACAAAGCAAATTTGTGTGCAACACAGAGCAGCCGGGCTGTGAGAATGTCTGCTATGATGCCTTTGCCCCG
CTCTCCCACGTGCGCTTCTGGGTATTCCAGATCATCCTGGTTGCAACTCCCTCTGTGATGTACCTGGGAT
ATGCTATTCATAAGATTGCCAAAATGGAGCATGGCGAGGCAGACAAGAAGGCAGCTCGGAGCAAACCCTA
TGCCATGCGTTGGAAACAGCACCGGGCTCTGGAAGAAACGGAAGAGGACCATGAAGAGGATCCTATGATG
TATCCAGAGATGGAGTTAGAAAGCGAAAAAGAAAATAAAGAGCAGAGCCAACCAAAACCTAAGCATGATG
GCCGACGACGAATTCGAGAGGATGGGCTCATGAAAATCTATGTGTTGCAGCTGCTGGCCAGGACTGTGTT
TGAGGTGGGCTTTCTAATAGGGCAGTATTTCCTGTATGGCTTCCAAGTCCACCCATTTTATGTGTGCAGC
AGACTTCCTTGCCCTCATAAGATAGACTGCTTTATTTCTAGACCCACTGAAAAGACCATCTTCCTTCTGA
TAATGTATGGTGTCACAGGCCTCTGCCTATTGCTTAACATTTGGGAGATGCTTCACTTAGGGTTTGGGAC
AATTCGAGACTCACTAAACAGTAAAAGGAGGGAACTTGATGATCCGGGTGCTTATAATTATCCTTTCACT
TGGAACACACCCTCTGCTCCCCCTGGCTATAACATTGCTGTCAAACCAGATCAGATCCAGTACACTGAGC
TGTCCAATGCTAAGATTGCCTACAAGCAAAACAAAGCCAATATTGCCCAGGAACAGCAGTACGGCAGCCA
CGAGGAACACCTCCCGGCTGATCTGGAGACTCTGCAGCGGGAGATCAGAATGGCTCAGGAACGCTTGGAC
CTAGCAATCCAGGCCTACCATCACCAAAACAACCCCCATGGTCCTCGGGAAAAGAAGGCCAAAGTGGGGT
CCAAATCTGGGTCCAACAAAAGCAGTATTAGTAGCAAATCAGGGGATGGGAAGACCTCCGTCTGGATTTA
A

Translation (396 aa):
MSWSFLTRLLEEIHNHSTFVGKIWLTVLIVFRIVLTAVGGESIYYDEQSKFVCNTEQPGCENVCYDAFAP
LSHVRFWVFQIILVATPSVMYLGYAIHKIAKMEHGEADKKAARSKPYAMRWKQHRALEETEEDHEEDPMM
YPEMELESEKENKEQSQPKPKHDGRRRIREDGLMKIYVLQLLARTVFEVGFLIGQYFLYGFQVHPFYVCS
RLPCPHKIDCFISRPTEKTIFLLIMYGVTGLCLLLNIWEMLHLGFGTIRDSLNSKRRELDDPGAYNYPFT
WNTPSAPPGYNIAVKPDQIQYTELSNAKIAYKQNKANIAQEQQYGSHEEHLPADLETLQREIRMAQERLD
LAIQAYHHQNNPHGPREKKAKVGSKSGSNKSSISSKSGDGKTSVWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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