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Report for CCDS25498.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25498.1 Public Mus musculus 11 Slc25a39 23 108 98 CCDS HistoryNCBI Gene:68066Re-query CCDS DB by CCDS ID:25498.1Re-query CCDS DB by GeneID:68066See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25498.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018821.8 ENSMUSP00000018821.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018821.8Link to Ensembl Protein Viewer:ENSMUSP00000018821.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000018821Re-query CCDS DB by Protein ID:ENSMUSP00000018821
Original member Current member NCBI NM_026542.3 NP_080818.1 Accepted alive Link to Nucleotide Sequence:NM_026542.3Link to Protein Sequence:NP_080818.1Re-query CCDS DB by Nucleotide ID:NM_026542Re-query CCDS DB by Protein ID:NP_080818Link to BLAST:NP_080818.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080818.1 359 Q9D8K8 359 100% 0 0

Chromosomal Locations for CCDS 25498.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102403420 102403535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102403633 102403713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102403791 102403872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102404031 102404140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102404452 102404625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102404795 102404919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102405012 102405079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102405693 102405826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102406206 102406250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102406362 102406421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102406555 102406639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGATGATCAGGACCCTGGGGGCATTAGCCCCCTTCAGCAAATGGTGGCCTCAGGAGCCGGGGCTGTGG
TCACCTCCCTCTTCATGACACCCCTGGATGTGGTGAAGGTCCGCCTTCAGTCTCAGAGACCCTCGGCAAC
CAGCGAATTGACAACTCCCTCCAGATTCTGGAGTCTCTCCTACACCAAATCATCCTCCGCTCTACAGTCC
CCAGGGAAGTGCCTCCTATACTGCAATGGAGTCCTGGAGCCCCTGTACCTGTGCCCAAATGGTACCCGCT
GTGCCACCTGGTTTCAGGACCCCACACGGTTCACTGGCACCTTGGATGCCTTTGTGAAGATTGTGCGGCA
TGAGGGCACTAGGACCCTGTGGAGCGGCCTCCCAGCCACCCTGGTGATGACCGTGCCAGCTACTGCTATC
TACTTCACTGCTTACGACCAACTCAAGGCCTTCCTGTGTGGTCAGTCCTTGACCTCTGACCTCTACGCAC
CCATGGTGGCTGGTGCCCTCGCCCGAATGGGCACCGTGACAGTTGTCAGCCCCTTGGAGCTCGTGCGGAC
CAAGCTGCAGGCTCAGCATGTGTCATACCGTGAGCTGGCTTCCTCTGTTCAAGCTGCGGTGACTCAGGGT
GGCTGGCGCTCTCTGTGGCTGGGCTGGGGTCCCACAGCTCTTCGAGATGTCCCCTTCTCAGCTCTGTACT
GGTTCAACTACGAGTTGGTGAAGAGCTGGCTGAGCGGACTGAGACCAAAAGACCAGACATCGGTGGGCAT
CAGCTTCGTGGCCGGTGGCATCTCAGGAATGGTGGCTGCCACCCTTACCCTACCCTTCGATGTGGTGAAG
ACACAGCGACAGATGTCACTGGGAGCGGTGGAGGCTGTGAGAGTGAAGCCGCCCAGAGTGGACTCCACCT
GGCTCCTGCTTCGCAGAATCCGGGCTGAATCTGGCACCAGGGGACTCTTTGCAGGCTTCCTCCCCAGGAT
CATCAAGGCTGCACCCTCCTGTGCCATCATGATCAGCACTTACGAGTTTGGCAAAAGCTTCTTCCAGAGG
CTCAACCAGGAGCAGCCTCTGGGCCGCTGA

Translation (359 aa):
MDDQDPGGISPLQQMVASGAGAVVTSLFMTPLDVVKVRLQSQRPSATSELTTPSRFWSLSYTKSSSALQS
PGKCLLYCNGVLEPLYLCPNGTRCATWFQDPTRFTGTLDAFVKIVRHEGTRTLWSGLPATLVMTVPATAI
YFTAYDQLKAFLCGQSLTSDLYAPMVAGALARMGTVTVVSPLELVRTKLQAQHVSYRELASSVQAAVTQG
GWRSLWLGWGPTALRDVPFSALYWFNYELVKSWLSGLRPKDQTSVGISFVAGGISGMVAATLTLPFDVVK
TQRQMSLGAVEAVRVKPPRVDSTWLLLRRIRAESGTRGLFAGFLPRIIKAAPSCAIMISTYEFGKSFFQR
LNQEQPLGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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