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Report for CCDS25497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25497.1 Public Mus musculus 11 Rundc3a 23 108 98 CCDS HistoryNCBI Gene:51799Re-query CCDS DB by CCDS ID:25497.1Re-query CCDS DB by GeneID:51799See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25497.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006750.7 ENSMUSP00000006750.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006750.7Link to Ensembl Protein Viewer:ENSMUSP00000006750.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000006750Re-query CCDS DB by Protein ID:ENSMUSP00000006750
Original member Current member NCBI NM_016759.5 NP_058039.1 Accepted alive Link to Nucleotide Sequence:NM_016759.5Link to Protein Sequence:NP_058039.1Re-query CCDS DB by Nucleotide ID:NM_016759Re-query CCDS DB by Protein ID:NP_058039Link to BLAST:NP_058039.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058039.1 446 O08576-1 446 100% 0 0

Chromosomal Locations for CCDS 25497.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102393676 102393782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102397571 102397686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102398085 102398233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102398377 102398462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102399195 102399284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102399383 102399463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102399615 102399780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102399888 102400045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102400661 102400798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102400894 102401000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102401981 102402123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGGAAGCGAGCTTTGTCCAGACCACCATGGCTCTGGGGCTGCCCTCCAAGAAAGCATCTTCCCGCAACG
TGATCGTGGAGCGCAGGAACCTGATCACCGTGTGCAGGTTCTCTGTGAAAACCCTGCTAGAGAAGTACAC
AGCAGAACCCATTGATGACTCTTCCGAGGAGTTTGTTAATTTCGCAGCCATTTTAGAGCAGATCCTCAGC
CACCGATTTAAAGCTTGTGCCCCAGCAGGGCCAGCGAGCTGGTTCAGCTCAGATGGACAACGGGGCTTCT
GGGACTACATCCGGCTGGCCTGCAGCAAAGTGCCCAACAACTGTGTGAGCAGCATTGAGAACATGGAGAA
CATCAGCACAGCTAGAGCCAAGGGCCGGGCGTGGATCCGGGTGGCCCTGATGGAGAAGCGTATGTCGGAA
TACATCACCACAGCTCTTCGGGACAACCGAACTACCAGACGGTTCTATGACTCCGGAGCCATCATGCTGC
GGGAGGAAGCCACTGTCCTCACTGGGATGCTGATCGGGCTCAGCGCCATCGACTTCAGCTTCTGTCTAAA
GGGCGAAGTTCTGGATGGGAAGACACCGGTGGTCATCGATTACACACCCTACCTAAAATTCACCCAAAGC
TACGACTACCTGACGGATGAGGAGGAGAGGCACAGTGCCGAGAGCAGCACCAGCGAGGACAACTCACCAG
AGCACCCCTACCTGCCTCTCGTCACCGATGAAGACAGTTGGTACAACAAGTGGCACAAGATGGAACAGAA
GTTTCGCATTGTCTACGCACAGAAGGGATACCTGGAGGAGCTGGTGCGGCTGCGCGAGTCGCAGCTGAAG
GACTTGGAGGCGGAGAACCGGCGGCTGCAGCTGCAGCTGGAGGAGGCCGCGGCACAAAATCAGCGTGAGA
AGCGGGAGCTGGAAGGCGTGATCCTGGAGCTGCAGGAGCAGCTGACAGGTCTGATCCCCGGTGACCATGC
CCCCCTGGCCCAGGGTTCCAAGGAGCTCACCACATCCCTAGTCAACCAGTGGCCCTCCCTGAGCACACTT
CATAGGCCCGAGGGTGCCAGCAACTCCAAGCTATATCGGAGACACAGCTTCATGAGCACGGAGCCGCTGT
CTGCAGAGGCCAGCCTGAGCTCAGACTCCCAGCGCCTGGGAGAGGCCAAGAGGGACGAGGAACCCTGGGG
CCCCATCGGGAAGGACCCCACGCCCTCCATGCTGGGCCTCTGCGGCTCCCTGGCCTCCATCCCCAGCTGC
AAGTCCCTGGCAAGCTTCAAATCCAACGAATGCCTGGTGAGCGACAGCCCTGAGGGCAGCCCGGCGCTCA
GCCCCAGCTGA

Translation (446 aa):
MEASFVQTTMALGLPSKKASSRNVIVERRNLITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILS
HRFKACAPAGPASWFSSDGQRGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSE
YITTALRDNRTTRRFYDSGAIMLREEATVLTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS
YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYNKWHKMEQKFRIVYAQKGYLEELVRLRESQLK
DLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPGDHAPLAQGSKELTTSLVNQWPSLSTL
HRPEGASNSKLYRRHSFMSTEPLSAEASLSSDSQRLGEAKRDEEPWGPIGKDPTPSMLGLCGSLASIPSC
KSLASFKSNECLVSDSPEGSPALSPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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