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Report for CCDS25465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25465.1 Public Mus musculus 11 Aoc3 23 108 98 CCDS HistoryNCBI Gene:11754Re-query CCDS DB by CCDS ID:25465.1Re-query CCDS DB by GeneID:11754See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25465.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103105.9 ENSMUSP00000099394.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103105.9Link to Ensembl Protein Viewer:ENSMUSP00000099394.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103105Re-query CCDS DB by Protein ID:ENSMUSP00000099394
Original member Current member NCBI NM_009675.2 NP_033805.1 Accepted alive Link to Nucleotide Sequence:NM_009675.2Link to Protein Sequence:NP_033805.1Re-query CCDS DB by Nucleotide ID:NM_009675Re-query CCDS DB by Protein ID:NP_033805Link to BLAST:NP_033805.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033805.1 765 O70423-1 765 100% 0 0

Chromosomal Locations for CCDS 25465.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101330940 101332539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101335717 101336002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101336349 101336478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101337385 101337666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2298 nt):
ATGACCCAGAAGACCACCCTAGTGCTCCTGGCTCTGGCTGTCATCACCATCTTTGCTTTGGTTTGTGTCT
TGCTAGCTGGCAGGAGCGGAGATGGGGGTGGACTGAGCCAACCTCTTCATTGCCCCTCTGTTCTTCCTAG
TGTCCAGCCCCGGACACACCCTAGCCAGAGCCAGCCGTTTGCAGACCTGAGCCCAGAGGAGCTGACAGCT
GTGATGAGCTTCCTGACCAAGCACCTGGGGCCAGGGCTGGTGGATGCAGCCCAGGCTCGACCCTCGGACA
ACTGTGTCTTCTCAGTAGAGTTGCAGCTGCCTGCCAAGGCTGCAGCCCTGGCCCACTTGGACAGAGGGGG
GCCCCCACCTGTGAGAGAGGCATTGGCCATCATCTTCTTTGGTGGACAACCCAAGCCCAACGTGAGTGAG
CTGGTGGTGGGGCCCCTGCCTCACCCCTCCTACATGCGGGATGTGACTGTGGAGCGCCACGGCGGCCCCC
TGCCCTATTACCGGCGTCCTGTGTTGGACAGAGAGTATCAGGATATCGAGGAGATGATCTTCCACAGAGA
GCTGCCCCAAGCTTCTGGACTCCTCCATCACTGTTGCTTCTACAAACACCAGGGACAGAACCTGCTAACA
ATGACTACAGCCCCCCGTGGTTTGCAATCAGGGGACCGGGCCACCTGGTTTGGCTTGTATTACAATCTCT
CAGGGGCTGGGTTTTACCCTCACCCCATTGGCTTGGAGCTTCTGATAGATCATAAGGCCCTGGATCCTGC
CCTGTGGACCATCCAGAAGGTATTCTATCAAGGCCGTTACTATGAGAGTCTCACTCAGCTGGAGGACCAG
TTTGAGGCTGGCCTGGTGAATGTGGTATTGGTCCCAAACAATGGTACAGGTGGGTCCTGGTCTCTAAAGT
CCTCAGTGCCACCGGGCCCAGCTCCCCCTCTGCAGTTCCATCCCCAGGGACCCCGGTTCAGTGTCCAGGG
GAGCCAAGTGTCTTCTTCCTTGTGGGCTTTTTCTTTTGGCCTTGGAGCTTTCAGTGGCCCAAGGATCTTT
GATATCCGCTTTCAAGGGGAGAGGGTGGCCTATGAAATCAGTGTCCAGGAGGCCATAGCCCTCTACGGTG
GAAATTCCCCAGCATCAATGTCGACCTGCTACGTGGACGGTAGCTTTGGCATTGGCAAATACTCTACCCC
CCTGATCCGAGGGGTAGACTGTCCTTACCTCGCCACCTATGTGGACTGGCACTTCCTTCTGGAATCTCAG
GCCCCCAAGACACTACGTGATGCATTTTGTGTGTTTGAACAGAACCAGGGCCTCCCACTCCGGCGGCACC
ACTCAGATTTCTACTCCCATTATTTTGGGGGTGTTGTGGGGACGGTGCTTGTGGTCAGATCCGTGTCTAC
CTTGCTCAATTACGACTACATATGGGACATGGTCTTCCACCCCAATGGGGCCATAGAAGTCAAATTCCAC
GCCACAGGCTATATCAGCTCAGCTTTCTTCTTCGGTGCTGGTGAGAAGTTTGGGAACCGAGTTGGGGCGC
ACACGCTGGGCACGGTACACACCCACAGCGCTCACTTCAAAGTGGATCTGGATGTGGCAGGGCTGAAGAA
CTGGGCCTGGGCAGAGGATATGGCTTTTGTCCCCACGATTGTACCTTGGCAACCGGAGTACCAGATGCAG
AGGCTGCAGGTGACTCGGAAGCTGCTGGAGACAGAGGAGGAGGCTGCCTTCCCACTGGGGGGCGCCACCC
CACGCTACCTGTACCTGGCCAGTAACCACAGCAACAAGTGGGGTCATAGGCGGGGCTACCGCATCCAGAT
ACTCAGCTTTGCTGGAAAGCCCTTGCCCCAGGAAAGTCCCATAGAGAAAGCCTTCACCTGGGGGAGGTAT
CACTTGGCTGTGACCCAGAGGAAGGAGGAGGAGCCTAGCAGCTCTAGCATCTTCAACCAGAACGACCCGT
GGACCCCCACTGTGAACTTCACCGACTTCATCAGCAATGAGACCATTGCTGGAGAGGACTTGGTAGCCTG
GGTGACGGCTGGCTTTTTGCACATCCCTCATGCAGAAGATATCCCCAACACGGTGACTGCGGGGAACTCA
GTGGGCTTCTTCCTCCGGCCGTATAACTTCTTTGACGAGGACCCCTCCTTTCATTCTGCTGACTCCATCT
ATTTCCGGGAGGGCCAGGATGCCACGGCCTGTGAGGTTAACCCCTTGGCTTGCCTGTCCCAGACTGCCAC
CTGTGCCCCCGAAATTCCTGCCTTCTCCCATGGGGGCTTTGCTTACAGAGACAATTGA

Translation (765 aa):
MTQKTTLVLLALAVITIFALVCVLLAGRSGDGGGLSQPLHCPSVLPSVQPRTHPSQSQPFADLSPEELTA
VMSFLTKHLGPGLVDAAQARPSDNCVFSVELQLPAKAAALAHLDRGGPPPVREALAIIFFGGQPKPNVSE
LVVGPLPHPSYMRDVTVERHGGPLPYYRRPVLDREYQDIEEMIFHRELPQASGLLHHCCFYKHQGQNLLT
MTTAPRGLQSGDRATWFGLYYNLSGAGFYPHPIGLELLIDHKALDPALWTIQKVFYQGRYYESLTQLEDQ
FEAGLVNVVLVPNNGTGGSWSLKSSVPPGPAPPLQFHPQGPRFSVQGSQVSSSLWAFSFGLGAFSGPRIF
DIRFQGERVAYEISVQEAIALYGGNSPASMSTCYVDGSFGIGKYSTPLIRGVDCPYLATYVDWHFLLESQ
APKTLRDAFCVFEQNQGLPLRRHHSDFYSHYFGGVVGTVLVVRSVSTLLNYDYIWDMVFHPNGAIEVKFH
ATGYISSAFFFGAGEKFGNRVGAHTLGTVHTHSAHFKVDLDVAGLKNWAWAEDMAFVPTIVPWQPEYQMQ
RLQVTRKLLETEEEAAFPLGGATPRYLYLASNHSNKWGHRRGYRIQILSFAGKPLPQESPIEKAFTWGRY
HLAVTQRKEEEPSSSSIFNQNDPWTPTVNFTDFISNETIAGEDLVAWVTAGFLHIPHAEDIPNTVTAGNS
VGFFLRPYNFFDEDPSFHSADSIYFREGQDATACEVNPLACLSQTATCAPEIPAFSHGGFAYRDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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