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Report for CCDS25444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25444.1 Public Mus musculus 11 Naglu 23 108 98 CCDS HistoryNCBI Gene:27419Re-query CCDS DB by CCDS ID:25444.1Re-query CCDS DB by GeneID:27419See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25444.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001802.9 ENSMUSP00000001802.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001802.9Link to Ensembl Protein Viewer:ENSMUSP00000001802.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000001802Re-query CCDS DB by Protein ID:ENSMUSP00000001802
Original member NCBI NM_013792.2 NP_038820.2 Updated not alive Link to Nucleotide Sequence:NM_013792.2Link to Protein Sequence:NP_038820.2Re-query CCDS DB by Nucleotide ID:NM_013792Re-query CCDS DB by Protein ID:NP_038820
Current member NCBI NM_013792.3 NP_038820.2 Accepted alive Link to Nucleotide Sequence:NM_013792.3Link to Protein Sequence:NP_038820.2Re-query CCDS DB by Nucleotide ID:NM_013792Re-query CCDS DB by Protein ID:NP_038820Link to BLAST:NP_038820.2

Chromosomal Locations for CCDS 25444.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101070125 101070501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101071080 101071227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101071896 101072042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101072217 101072302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101073847 101074103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101076241 101077445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGGAAGCCGCGGGGCTGGCCGTGATTCTGGGGTTCCTACTCCTGGCTGGGGGCTCTGTGGGTGATGAGG
CTCGGGAGGCAAAGGCCGTGCGGGAACTGGTGGTCCGGCTACTGGGACCCGGGCCGGCGGCCAATTTCTT
GGTGTCCGTGGAGCGCGCGCTGGCGGACGAGTCGGGCCTGGACACCTACAGCCTGAGCGGCGGCGGCGGG
GTGCCAGTGCTTGTGCGCGGCTCCACGGGCGTGGCGGCAGCCGCGGGGCTGCACCGCTACCTGCGTGACT
TCTGTGGCTGTCAGGTGGCCTGGTCCAGCGCTCAGCTGCACCTGCCGTGGCCGCTGCCCGCTGTGCCCGA
CGGGCTGACCGAAACCACGCCCAACAGGTACCGCTATTACCAGAATGTGTGCACGCACAGCTACTCCTTC
GTGTGGTGGGACTGGGCCCGTTGGGAGCAAGAGATTGACTGGATGGCACTGAATGGCATCAACCTGGCTC
TGGCTTGGAATGGCCAGGAGGCCATCTGGCAAAGGGTATACCTGGCCTTGGGCCTGACCCAGTCAGAGAT
CGATACGTACTTCACCGGTCCTGCCTTCCTGGCCTGGGGACGCATGGGTAACTTGCACACCTGGGATGGC
CCCCTGCCCCGTTCCTGGCACCTCAGTCAAGTCTACCTGCAGCATCGAATCCTGGACCGGATGCGCTCCT
TTGGCATGATCCCAGTGCTGCCTGCCTTCGCAGGGCATGTCCCCAAGGCCATCACCAGGGTGTTTCCACA
GGTCAATGTCATCAAGTTGGGGAGCTGGGGACATTTCAACTGCTCCTACAGCTGCTCCTTCCTTCTGGCT
CCAGGAGACCCCATGTTTCCCCTCATCGGGAACCTCTTCCTACGGGAGCTGACCAAGGAGTTTGGCACAG
ATCATATCTATGGGGCTGACACCTTCAATGAGATGCAGCCTCCCTTCTCTGACCCCTCCTACCTCGCCGC
TACCACTGCAGCCGTCTATGAAGCCATGGTCACTGTGGACCCTGATGCTGTTTGGCTGCTCCAAGGCTGG
CTCTTCCAGCACCAGCCCCAGTTCTGGGGCCCCTCTCAAATCAGGGCTGTGCTGGAGGCCGTGCCCCGTG
GTCGTCTCCTGGTTCTGGACCTGTTTGCTGAAAGCCATCCTGTTTACATGCACACAGCCTCCTTCCATGG
CCAGCCCTTCATCTGGTGTATGCTCCACAACTTTGGGGGCAACCATGGCCTGTTTGGAGCCCTCGAGGAT
GTGAACCGAGGCCCCCAGGCAGCTCGCCTCTTCCCTAACTCCACCATGGTCGGCACTGGCATAGCCCCCG
AGGGCATTGGCCAGAATGAAGTGGTCTATGCTCTCATGGCTGAGCTGGGCTGGCGCAAGGACCCTGTACC
AGATTTGATGGCCTGGGTGAGCAGCTTTGCCATCCGCCGATACGGGGTCTCCCAGCCTGATGCCGTGGCA
GCTTGGAAGCTCCTACTCAGAAGTGTCTACAACTGCTCTGGGGAGGCGTGCAGTGGGCACAATCGAAGCC
CGTTGGTCAAGCGGCCGTCCCTACAGATGAGTACCGCTGTCTGGTACAACAGATCAGATGTGTTTGAGGC
TTGGCGACTGCTGTTAACAGCTGCCCCAAACCTGACCACCAGCCCAGCCTTCCGCTATGACCTGCTGGAT
GTCACCCGCCAAGCCGTGCAGGAGTTGGTCAGCCTGTGCTATGAGGAGGCAAGGACCGCCTACCTGAAGC
AAGAGCTTGATCTCCTGCTCAGGGCTGGAGGCCTCCTGGTCTATAAACTCCTGCCTACACTAGATGAGCT
GCTGGCTAGCAGCAGCCACTTCTTGCTGGGTACCTGGTTGGATCAGGCCCGGAAAGCGGCCGTAAGTGAG
GCCGAGGCCCAGTTCTATGAACAAAACAGCCGCTACCAGATTACCCTGTGGGGGCCCGAGGGCAACATTT
TGGATTATGCCAATAAGCAACTGGCAGGACTGGTGGCTGATTACTACCAGCCTCGCTGGTGCCTCTTCTT
GGGGACTCTGGCTCACAGCCTAGCCAGAGGTGTCCCCTTCCAACAGCACGAGTTTGAGAAGAACGTTTTC
CCACTCGAGCAGGCTTTCGTTTACAACAAGAAGAGGTACCCCAGTCAGCCCCGAGGGGACACCGTGGACC
TCTCCAAGAAGATCTTCCTCAAATATCACCCCCAGCCTGACTCTTTGTGA

Translation (739 aa):
MEAAGLAVILGFLLLAGGSVGDEAREAKAVRELVVRLLGPGPAANFLVSVERALADESGLDTYSLSGGGG
VPVLVRGSTGVAAAAGLHRYLRDFCGCQVAWSSAQLHLPWPLPAVPDGLTETTPNRYRYYQNVCTHSYSF
VWWDWARWEQEIDWMALNGINLALAWNGQEAIWQRVYLALGLTQSEIDTYFTGPAFLAWGRMGNLHTWDG
PLPRSWHLSQVYLQHRILDRMRSFGMIPVLPAFAGHVPKAITRVFPQVNVIKLGSWGHFNCSYSCSFLLA
PGDPMFPLIGNLFLRELTKEFGTDHIYGADTFNEMQPPFSDPSYLAATTAAVYEAMVTVDPDAVWLLQGW
LFQHQPQFWGPSQIRAVLEAVPRGRLLVLDLFAESHPVYMHTASFHGQPFIWCMLHNFGGNHGLFGALED
VNRGPQAARLFPNSTMVGTGIAPEGIGQNEVVYALMAELGWRKDPVPDLMAWVSSFAIRRYGVSQPDAVA
AWKLLLRSVYNCSGEACSGHNRSPLVKRPSLQMSTAVWYNRSDVFEAWRLLLTAAPNLTTSPAFRYDLLD
VTRQAVQELVSLCYEEARTAYLKQELDLLLRAGGLLVYKLLPTLDELLASSSHFLLGTWLDQARKAAVSE
AEAQFYEQNSRYQITLWGPEGNILDYANKQLAGLVADYYQPRWCLFLGTLAHSLARGVPFQQHEFEKNVF
PLEQAFVYNKKRYPSQPRGDTVDLSKKIFLKYHPQPDSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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