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Report for CCDS25378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25378.1 Public Mus musculus 11 Krt26 23 108 98 CCDS HistoryNCBI Gene:320864Re-query CCDS DB by CCDS ID:25378.1Re-query CCDS DB by GeneID:320864See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25378.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100482.2 ENSMUSP00000098051.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100482.2Link to Ensembl Protein Viewer:ENSMUSP00000098051.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100482Re-query CCDS DB by Protein ID:ENSMUSP00000098051
Original member Current member NCBI NM_001033397.5 NP_001028569.2 Accepted alive Link to Nucleotide Sequence:NM_001033397.5Link to Protein Sequence:NP_001028569.2Re-query CCDS DB by Nucleotide ID:NM_001033397Re-query CCDS DB by Protein ID:NP_001028569Link to BLAST:NP_001028569.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028569.2 462 Q3TRJ4 462 100% 0 0

Chromosomal Locations for CCDS 25378.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99329634 99329785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99331243 99331301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99333513 99333730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99334694 99334819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99334905 99335066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99335195 99335351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99336485 99336567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99337473 99337904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1389 nt):
ATGTCTTTTCGGTTTTCGGGGCGATCCAGGGTCTGTTCTCGAGCTGGGTCTGTCAGGCTGTCCAGAGGAG
GGGCAGGCTTTGTGGCCGGGAACGTGTGTGTTGGGCCTGGAGCGGAAGGCAGCTTTTCTTGCACCCTTGG
GGGCCTCTCTTCTGGAGGAAGCTTTGCCAGCGAGGGGTCAGGTAGGGGAAGTAGCATTGGCTTCCTTAAC
AACGAGCCAGGACTCTTCTCTGGGAACGAGAAGGTGGCCATGCAGAACCTCAATGACCGCCTGGCCTTGT
ACCTGAACCACGTGAGTGCCCTGGAGGAGGCCAACACGGACCTGGAGAAGAAGATCGAGGGCTGGTACGA
GAAGTGTGGGCCCGGCAGAGGCCGTAGACTTGACCATGACTGCAGCCGGTATTTCTCAGTCATTGAGGAT
TTGAAACGACAGATCCTGTCTATGACCACCTGCAATGCCAACCTTGTCCTTCAAAATGACAATGCCAGAC
TCACAGCTGATGACTTCAAGATGAAGTATGAAAATGAACTGGCTCTGCACCAGAGTGTTGAGGCTGACAC
CAACGGCCTTCGCAGAGTGTTGGACGAGCTGACGCTGTCTACAACCGACTTGGAAATACAACGGGAGGCT
CTGAGCGAGGAGCTGACGTACCTCCAAAAGAACCACGAGGAGGAAATGGTGGTTCTGCAAAATGCATCAG
GGGGGAACATCAATGTGGAGATGAACGCAGCCCCCAGCGTGGATCTAACCGCCATGTTGAACAACATGAG
GGCCGAATATGAAGATTTGGCTGAGCAGAACCGGAAAGATGCAGAGGCCAGCTTTAAAGAGAAGAGCGCG
TCGCTGCAGCAACAGATTTCAGATGACGCAGGAGCAGCCACAGCAGCCAGAAACGAACTGATGGAACTGA
AACGCAATCTGCAGACTCTAGAGATAGAACTTCAGTCCATCACGGCTATGAAACAATCCTACGAAAATTC
ATTGGCTGAGACCGAAGGGAATTACTATGCTCAACTCCAGCAAATTCAGGAGCAGATTGGGGCGCGGGAG
GAGCAGCTGCAGCAGATCCGAACAGAGACGGAAGGCCAGAAGCTGGAGCACGAGCAGCTGCTGGGCATCA
AAACGTGTTTAGAGAAGGAGATTGACACATACTGCAACTTACTAGACGGAGAGGAACAAAGAAGTGAATC
CACAAGTTACAAACCAAAGGATGGCAAGCCTGCAAGTGAATTCAATGACTCAGCAGAAGAAACATTTGCC
AGAACAGTGGCTGAAGAGCTAGATCAACTTGGTAACCTCCTTTCACTGAGAGTGCACTCCGTGGAAGAAA
AATCCTCTAAGATCAGCAATATCACCATGGAGCAGCGGGTGCCTTCCAAAGCCCCATAG

Translation (462 aa):
MSFRFSGRSRVCSRAGSVRLSRGGAGFVAGNVCVGPGAEGSFSCTLGGLSSGGSFASEGSGRGSSIGFLN
NEPGLFSGNEKVAMQNLNDRLALYLNHVSALEEANTDLEKKIEGWYEKCGPGRGRRLDHDCSRYFSVIED
LKRQILSMTTCNANLVLQNDNARLTADDFKMKYENELALHQSVEADTNGLRRVLDELTLSTTDLEIQREA
LSEELTYLQKNHEEEMVVLQNASGGNINVEMNAAPSVDLTAMLNNMRAEYEDLAEQNRKDAEASFKEKSA
SLQQQISDDAGAATAARNELMELKRNLQTLEIELQSITAMKQSYENSLAETEGNYYAQLQQIQEQIGARE
EQLQQIRTETEGQKLEHEQLLGIKTCLEKEIDTYCNLLDGEEQRSESTSYKPKDGKPASEFNDSAEETFA
RTVAEELDQLGNLLSLRVHSVEEKSSKISNITMEQRVPSKAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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